Cgly020022.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979648.1:2780318-2780935[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-09 3.1e-06 27.4 0.0 2 42 13 52 12 55 0.88
Sequence Information
- Coding Sequence
- ATGCCGCCAGTAAAAGGACAGATGTTTCGTTACTCTGAGGCTGATATGGAAGCCGCTATTCAAGAATGCAAACGAGGAGTTCCGACGTCAACTGCGGCAAAAAAATTTGGGGTACCTAGGGTAACTCTGCTGAATAAAGTAAAGGGTAAGACACCAATGAGACGAAAAATGGGAAGAACATGCTACATCTCAGATGATACTGAAGCTTTGCTTGTTAAGTGGGCTAAAGCAATGGTGAAACAAGGATTCCCAATGGGCAAGAAGAATTTACAAGATAGTGTGAAAAAAATTGTTGatgatttgaatttggaaactCCTTTTAAAGATGGGAGGCCTGGTAAAAAATGGTACAGCAGTTTTTTAAAACGGCACCCAGAGCTTACCCCTAGACAGCCTCAAAATTTAACTTCATCCAGAGCTTTAGTCACACCGTCACAGTTAAAGAATTGGTTTAAAGAAGTCAGCACCTATCTTGACGAAAACAATTACACAAATATTTTGGTTGAACCTTATCGAATTTTTAATATGGATGAGACTGCATTTTTTTTGAATCCGAAAGGGAACAAGGTACTAGCAGCTAAAGGCGAAAAATCGGTGTACCAGCAAGTTAAAGATTGA
- Protein Sequence
- MPPVKGQMFRYSEADMEAAIQECKRGVPTSTAAKKFGVPRVTLLNKVKGKTPMRRKMGRTCYISDDTEALLVKWAKAMVKQGFPMGKKNLQDSVKKIVDDLNLETPFKDGRPGKKWYSSFLKRHPELTPRQPQNLTSSRALVTPSQLKNWFKEVSTYLDENNYTNILVEPYRIFNMDETAFFLNPKGNKVLAAKGEKSVYQQVKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00044439;
- 90% Identity
- iTF_00255788;
- 80% Identity
- -