Cnem014336.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01000867.1:22443-22991[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.7e-09 2.3e-06 27.8 0.0 2 45 13 55 12 55 0.86
Sequence Information
- Coding Sequence
- ATGCCGCCAATTAAAGGACAGATGTTTCGTTACTCTGAGGCTGATATGGAAGCAGCTATTCAAGAATGCAGACGAGGAGTTCTGACATTGACTGCGGCAAAAAAATTTGGGGTACCTAGAGTAACTCTGCTAAATAAAGTAAAGGGTAAGACACCAATGAAACGAAAAACGGGAAGAACATGCTATATCTCAGATGATACTGAAGCTTTGCTTGTAAAGTGGGCTAAAGCAATGGTGAAACAAGGATTCCCAATAAGCAAAGACAACTTACAAGATAGTGTGCAAAAAATTGTTGATGATTTGAATTTAGAAACTCCTTTTAAAGATGGCAGGCCTGGTAAACGGTGGTACAGCAGTTTTTTAAAACGTCACCCAGAGCTTATCCCTAGACAGCCTCAAAATTTAACTTCATCCAGAGCTTCAGTCACAACATCGCAGTTAAAGAATTGGTTTAAAGAAGTCAACACCTATCTTGAAGAAAACAATTACACAATTATTTTGGTTGAACCTCATCGAATTTTTAATATGGATGAgactgcatttttttaa
- Protein Sequence
- MPPIKGQMFRYSEADMEAAIQECRRGVLTLTAAKKFGVPRVTLLNKVKGKTPMKRKTGRTCYISDDTEALLVKWAKAMVKQGFPISKDNLQDSVQKIVDDLNLETPFKDGRPGKRWYSSFLKRHPELIPRQPQNLTSSRASVTTSQLKNWFKEVNTYLEENNYTIILVEPHRIFNMDETAFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00044439;
- 90% Identity
- iTF_00354018;
- 80% Identity
- -