Basic Information

Insect: Coenonympha glycerion
Gene Symbol: -
Assembly: GCA_963855885.1
Location: OY979644.1:4594884-4602056[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.4e-10 1.2e-07 31.9 0.0 5 40 1 36 1 39 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.4e-10	1.2e-07	31.9	0.0	5	40	1	36	1	39	0.92

Sequence Information

Coding Sequence: ATGCAAGCTGCTATCACTGCAGTGCGAGAGGGACGGTTCAAAATCAGAGAAGCTGCACGACATTTTGGCGTGCCCCATAGCACtctgataaataaattaaaaggcaGAGTTCCAGGAGTAAGAAAAATGGGACGTGATAcgtattttacagaaaaagaagaaaatcttCTAGTAAAATATATCATTGCAAGTGCTAAGAAGGGAATACCGATAAAAAGAAATACCTTAATAGAAACGGTGAAGAAAATATTAGATGACGACGAGAGAGTCACGCCATTCAAAAATAATCGGCCAGGCAAAAAATGGGTCACGTTATTTTGCAATCGACACCCGGAAATAACTGAGAAACAGGCTGAAGGGATCTCCACAGCACGAGCTAATGTATCTGAAAAAGACATCAAAAGCTGGCACCAATCCCTTAAAGAGTATTTAGTCGAAGAAAATGCTTTGGATATATTGGAAGAGCCCAAACGCATATTTAATGCAGACGAATCAGGTTTCCAGACATGCCCAGAGTCAGGCAAAGTTCTAGGGCCAGTTGGCATGAAAAACTTCTACCAAATAAAAGCTGGAAAAGAGAAAGAGCAACTGACTGTTATGGTCACTATCAATGCTGCAGGTCAAGTAGTTACGCCCATGATCGTTTACCCCCTAGTTCGCATTTCAAAAGAAATAGCAACAAATGTTCCGGAAAACTGGGGGATAGGCAAATCTCCCAAAGGTTGGATGACCGGACCTTTATACTACGAATACATTGCTAATATTCTAGATCCATGGGTGAAGGCGAACAACATAAAGAAACCTATTTTGCTCTTAATAGATGGGCATCGCTCTCACTTGACGTTACAAGTATCGCAGTACTGTGCTGAAAATCAAATTATAGCCTACGCTCTCTTTCCCAACTCAACGCACATTTCTCAGCCAGCGGACGTATCCGTATTCAAATGTATGAAAAGTGGCTGGAAAAATACCGTTTGCGAGTTCAAAGAAAGAACTGGGAATAGACAGATTACCCGTGCTGGATTCGCACCCCTGCTCgccaaagtttttaaagacaaagtCACTCCAGATATCATAAAGAATGGTTTTAAAAGATGTGGGATCTATCCATTTGACGTCACTGCTGTAGATTTGACAAGGTGCATGGATAATGAAACTAGAAAAATTGCACCCGTGTCAACTCCACCACGTGAGATCAGAGTGGAGACACTCTTGCTGTTTGAGTCTTTTATGAGACGAGGCCGTGTTGAACAATTTAGACGGAGTAATGAACAATGGGAAGGGGAGGAAACCGCCAAGGAATTATTCTATGTGTGGAAAAAGTTTCGTCAGCACTGTTTGTCGGAGGGTTTCCCGTCCAGAGCAGATGTTAGATCACCATCACCACAGAACCAGATCACTCTGCCGGTAGAAACGAAAATTCCCACAATGTGCAGTACACTAGTCTCGAAGACATCATTTCTACCAGAAGAGTTCAAGACTTCCTCAAGATGTAATACGCCGGTTTCAGTGGCACCACATCTTGAAGAAGAGTCCGAAGCTTCCACCAGATGTAGTACTCCGATAtctaaaacacatttttttccaGAACCGGCAGAAACTCCGACCAGAATTTGTACTCCGGTTTCGAACGCACATCTTCCAGAGGAGTCCGAAACTACCACCCGATCTTATACTCCAGTCTCAAAGACACTACATATTTCAGAGAAGTCCGGAACTCCAACTCAGATCTTGAAGTCACCTAATAACAGTTTTGAATGCCATTCTCCAATAATCCAAACTGATAACATTGGTGTTATGACACCCCCAGCAGCTGAAAAGAAATCATTAACTTCATCGAGCAATCTTCTTCTCTTAGCTGAGAAACAAAAACAAGTCAGTCCTGCTTTTGGAAACCATTTAATATGGCCCTCAGATTCTCcgataaaaaaacctaaaaaagaaAGACTGCCGTTCGCCACCACTTCTAAAAAATGGCAAGATTATTGGCTGtggaaagaaaatgaaaaagacCAACAAAATAGAAAAACAGAAAACAGAAAACGTGTTCGAGAAGAAAAGAAAATCAATAAAAGTAAACAAATACctaaaaaaaacacaataaaagaaattaaagGCGAGATGACCACTAAaataaccaacaaaaaaaagaaaagagtcCGAATCATTACAAGCGATACCAGTGATTCCAGTGAAGCGGTATCAGATGAGGAACCAGAACAGAGGATAGAAAAACACATAACCGATGATAAAACAGAATCTGAGAAAGAAAACAAGGAAGAGGCATCTTGTGCTAGTGTGGATTTAAATAGTTTGGAGAATGCCGGGTACGTGGTACCGGGTACGGGCGCCGAGGGGACGCGGCGTGTAATGACTAACGATGCGCGGGGAGCGGCGCCGGCGGTGCGGCGTTCAGCTGCAACAACCACCAACATTAGACACAACTCGAAACACCGACTAACCAACACTAATGAACATGGAAACGTAACTCTTGTAGTTAAAGCCACAccaggaaaataa
Protein Sequence: MQAAITAVREGRFKIREAARHFGVPHSTLINKLKGRVPGVRKMGRDTYFTEKEENLLVKYIIASAKKGIPIKRNTLIETVKKILDDDERVTPFKNNRPGKKWVTLFCNRHPEITEKQAEGISTARANVSEKDIKSWHQSLKEYLVEENALDILEEPKRIFNADESGFQTCPESGKVLGPVGMKNFYQIKAGKEKEQLTVMVTINAAGQVVTPMIVYPLVRISKEIATNVPENWGIGKSPKGWMTGPLYYEYIANILDPWVKANNIKKPILLLIDGHRSHLTLQVSQYCAENQIIAYALFPNSTHISQPADVSVFKCMKSGWKNTVCEFKERTGNRQITRAGFAPLLAKVFKDKVTPDIIKNGFKRCGIYPFDVTAVDLTRCMDNETRKIAPVSTPPREIRVETLLLFESFMRRGRVEQFRRSNEQWEGEETAKELFYVWKKFRQHCLSEGFPSRADVRSPSPQNQITLPVETKIPTMCSTLVSKTSFLPEEFKTSSRCNTPVSVAPHLEEESEASTRCSTPISKTHFFPEPAETPTRICTPVSNAHLPEESETTTRSYTPVSKTLHISEKSGTPTQILKSPNNSFECHSPIIQTDNIGVMTPPAAEKKSLTSSSNLLLLAEKQKQVSPAFGNHLIWPSDSPIKKPKKERLPFATTSKKWQDYWLWKENEKDQQNRKTENRKRVREEKKINKSKQIPKKNTIKEIKGEMTTKITNKKKKRVRIITSDTSDSSEAVSDEEPEQRIEKHITDDKTESEKENKEEASCASVDLNSLENAGYVVPGTGAEGTRRVMTNDARGAAPAVRRSAATTTNIRHNSKHRLTNTNEHGNVTLVVKATPGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01091703;
90% Identity: -
80% Identity: -