Cgly014928.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- sima
- Assembly
- GCA_963855885.1
- Location
- OY979641.1:9100031-9128896[-]
Transcription Factor Domain
- TF Family
- bHLH
- Domain
- HLH domain
- PFAM
- PF00010
- TF Group
- Basic Domians group
- Description
- A basic helix-loop-helix (bHLH) is a protein structural motif that characterizes one of the largest families of dimerizing transcription factors.It should not be confused with the helix-turn-helix domain.The motif is characterized by two α-helices connected by a loop. In general, transcription factors including this domain are dimeric, each with one helix containing basic amino acid residues that facilitate DNA binding. In general, one helix is smaller, and, due to the flexibility of the loop, allows dimerization by folding and packing against another helix. The larger helix typically contains the DNA-binding regions. bHLH proteins typically bind to a consensus sequence called an E-box, CANNTG. The canonical E-box is CACGTG (palindromic), however some bHLH transcription factors, notably those of the bHLH-PAS family, bind to related non-palindromic sequences, which are similar to the E-box. bHLH TFs may homodimerize or heterodimerize with other bHLH TFs and form a large variety of dimers, each one with specific functions.https://en.wikipedia.org/wiki/Basic_helix-loop-helix
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2e-05 0.0092 16.4 0.8 1 50 96 146 96 147 0.92 2 8 5.5e-05 0.025 15.0 0.3 9 50 174 216 168 217 0.90 3 8 1.4e-05 0.0061 17.0 0.6 9 50 244 286 238 287 0.90 4 8 5.5e-05 0.025 15.0 0.3 9 50 314 356 308 357 0.90 5 8 5.5e-05 0.025 15.0 0.3 9 50 384 426 378 427 0.90 6 8 1.4e-05 0.0061 17.0 0.6 9 50 454 496 448 497 0.90 7 8 5.5e-05 0.025 15.0 0.3 9 50 524 566 518 567 0.90 8 8 0.00026 0.12 12.9 0.5 9 50 594 636 588 637 0.90
Sequence Information
- Coding Sequence
- ATGTTCGTGAACGGCGAACCCCTTACTCAACGATGCCCCGTTGTCGGGAATTTCGAGGAGGCGGGATGGAATTTGCAGTGTCCTATGGCCAAGATTCAGACCAATCTACTGTGCAATCAACAAATACCGGATCAATCTATGGTATATACTCAACCAGTTCAGACCAATCTTCCTTGTCACCAAAGACCAGAATGGGATTACAACAGCATGTGTTACAACGTAGATGGACAGCCGTGCCAGTATACCAACGTGGTTGATCTAGAAGACTTTATGAATAACGAGAAACGCAAGGAGAAGTCGCGCGTGGCGGCGCGATGTCGTCGCACAAAAGAGATGCAGATCTTCAGCGAGCTGACGGCCGCTCTGCCGGCCAGGAAAGAGGACGTGGAACAGCTGGACAAGGCGTCTGTCATGCGCCTCGCCATATCCTACCTGCGTGTGCGTGACGTTGTGTCTATGCGTGAGTTTTCATTGATTGTTTTATACGTCTTCAACGTGTCGATAAAGTCGCGCGTGGCGGCACGATGTCGTCGCACAAAAGAGATGCAGATCTTCAGCGAGCTGACGGCCGCTCTGCCGGCCAGGAAAGAGGACGTGGAACAGCTGGACAAGGCGTCTGTCATGCGCCTCGCCATATCCTACCTGCGTGTGCGTGACGTTGTGTCTATGCGTGAGTTTTCATTGATTGTTTTATACGTCTTCAACGTGTCGATAAAGTCGCGCGTGGCGGCACGATGTCGTCGCACAAAAGAGATGCAGATCATCAGCGAGCTGACGGCCGCTCTGCCGGCCAGGAAAGAGGACGTGGAAAAGCTGGACAAGGCGTCTGTCATGCGCCTCGCTATATCCTACCTGCGTGTGCGTGACGTTGTGTCTATGCGTGAGTTTTCATTGATTGTTTTATACGTCTTCAACGTGTCGATAAAGTCGCGCGTGGCGGCACGATGTCGTCGCACAAAAGAGATGCAGATCTTCAGCGAGCTGACGGCCGCTCTGCCGGCCAGGAAAGAGGACGTGGAACAGCTGGACAAGGCGTCTGTCATGCGCCTCGCCATATCCTACCTGCGTGTGCGTGACGTTGTGTCTATGCGTGAGTTTTCATTGATTGTTTTATACGTCTTCAACGTGTCGATAAAGTCGCGCGTGGCGGCACGATGTCGTCGCACAAAAGAGATGCAGATCTTCAGCGAGCTGACGGCCGCTCTGCCGGCCAGGAAAGAGGACGTGGAACAGCTGGACAAGGCGTCTGTCATGCGCCTCGCCATATCCTACCTGCGTGTGCGTGACGTTGTGTCTATGCGTGAGTTTTCATTGATTGTTTTATACGTCTTCAACGTGTCGATAAAGTCGCGCGTGGCGGCACGATGTCGTCGCACAAAAGAGATGCAGATCATCAGCGAGCTGACGGCCGCTCTGCCGGCCAGGAAAGAGGACGTGGAAAAGCTGGACAAGGCGTCTGTCATGCGCCTCGCTATATCCTACCTGCGTGTGCGTGACGTTGTGTCTATGCGTGAGTTTTCATTGATTGTTTTATACGTCTTCAACGTGTCGATAAAGTCGCGCGTGGCGGCACGATGTCGTCGCACAAAAGAGATGCAGATCTTCAGCGAGCTGACGGCCGCTCTGCCGGCCAGGAAAGAGGACGTGGAACAGCTGGACAAGGCGTCTGTCATGCGCCTCGCCATATCCTACCTGCGTGTGCGTGACGTTGTGTCTATGCGTGAGTTTTCATTGATTGTTTTATACGTCTTCAACGTGTCGATAAAGTCGCGCGTGGCGGCACGATGTCGTCGCACAAAAGAGATGCAGATCATCAGCGAGCTGACGGCCGCTCTGCCGGCCAGGAAAGAGGACGTGGAACAGCTGGACAAGGCGTCTGTCATGCGCCTCGCCATATCCTACCTGCGTGTGCGTGACGTTGTGTCAATGCTGCCTGAAGACAAGGAAGCGCCGAAGCTGAAGAGTCCAAAAGGCTTAGAAGAGGTGCAGTCCGAGTTGTCGTACATGAACGCTTTGGACGGCTTCGTGCTGGTGCTTTCCCAGCAAGGCGACATCGTGTACTGCAGCGAAAACATCGCCGAACATCTGGGCGTGTCGCAGATGGAGATAATGGGGCAGAGCGTGTTCGAGTTCAGCCATCCCTGCGACCACGACGAGATTCGCGAGTCGCTGCGTTCGAGCGGCGAAGGAAGACGCGACTTACTCCTGCGCCTCAAGTGCACGATCACCAGCAAAGGGAGGAATGTGCATCTCAAATCGGCTTCATACAAGGTGATCCACGTGACCGGTCACATGCTTACCCCGACCGAGGAGAAAACCAAGGATCAAGACAGCACCGACTCAGACGAGGACAAAACCGACGTCAAGAAGTGCAGCAACACCGGAGCGCTGGTGGCTGTGGGCAGACCGATCCCTCACCCGGGCAACATCGAGACCCCGCTCTACAGCATGACCTTCCTCACCAAACACAGTTTGGATATGAAGTTCACGGATACGGATGAATGTTTAACGCAGAGCCTGGGCTTCGACTCGGAAGAGTTAGTTGGCCGCTCCCTGTACGACTACCTCCACGCAGCAGACAGCGCGACTTTGGTGCACCAGTTCAAATCATGTAAGTTTTTTTGA
- Protein Sequence
- MFVNGEPLTQRCPVVGNFEEAGWNLQCPMAKIQTNLLCNQQIPDQSMVYTQPVQTNLPCHQRPEWDYNSMCYNVDGQPCQYTNVVDLEDFMNNEKRKEKSRVAARCRRTKEMQIFSELTAALPARKEDVEQLDKASVMRLAISYLRVRDVVSMREFSLIVLYVFNVSIKSRVAARCRRTKEMQIFSELTAALPARKEDVEQLDKASVMRLAISYLRVRDVVSMREFSLIVLYVFNVSIKSRVAARCRRTKEMQIISELTAALPARKEDVEKLDKASVMRLAISYLRVRDVVSMREFSLIVLYVFNVSIKSRVAARCRRTKEMQIFSELTAALPARKEDVEQLDKASVMRLAISYLRVRDVVSMREFSLIVLYVFNVSIKSRVAARCRRTKEMQIFSELTAALPARKEDVEQLDKASVMRLAISYLRVRDVVSMREFSLIVLYVFNVSIKSRVAARCRRTKEMQIISELTAALPARKEDVEKLDKASVMRLAISYLRVRDVVSMREFSLIVLYVFNVSIKSRVAARCRRTKEMQIFSELTAALPARKEDVEQLDKASVMRLAISYLRVRDVVSMREFSLIVLYVFNVSIKSRVAARCRRTKEMQIISELTAALPARKEDVEQLDKASVMRLAISYLRVRDVVSMLPEDKEAPKLKSPKGLEEVQSELSYMNALDGFVLVLSQQGDIVYCSENIAEHLGVSQMEIMGQSVFEFSHPCDHDEIRESLRSSGEGRRDLLLRLKCTITSKGRNVHLKSASYKVIHVTGHMLTPTEEKTKDQDSTDSDEDKTDVKKCSNTGALVAVGRPIPHPGNIETPLYSMTFLTKHSLDMKFTDTDECLTQSLGFDSEELVGRSLYDYLHAADSATLVHQFKSCKFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -