Carc005231.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
nfxl1
Assembly
GCA_036785405.1
Location
CM072059.1:9712593-9715073[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 3 3.3e+04 -7.8 5.6 15 19 135 139 134 139 0.81
2 17 0.016 1.7e+02 3.2 0.3 4 10 170 176 169 177 0.97
3 17 4.7e-07 0.0051 17.6 15.9 3 19 187 203 186 203 0.95
4 17 3 3.3e+04 -5.0 2.1 6 10 228 232 227 232 0.81
5 17 2.4e-06 0.026 15.4 12.2 3 19 240 256 238 256 0.91
6 17 2.7e-09 3e-05 24.8 13.3 1 19 291 309 291 309 0.99
7 17 1.6e-05 0.18 12.7 19.3 3 19 346 362 338 362 0.86
8 17 0.0001 1.1 10.2 20.3 1 18 396 413 396 414 0.97
9 17 2.2e-08 0.00024 21.9 17.3 1 19 423 441 423 441 0.99
10 17 0.00011 1.2 10.1 6.1 9 19 489 499 487 499 0.90
11 17 0.0052 57 4.7 6.8 1 12 508 518 508 518 0.96
12 17 0.47 5.1e+03 -1.5 3.5 14 18 547 551 547 552 0.87
13 17 0.83 9.1e+03 -2.3 0.3 8 11 568 571 568 572 0.75
14 17 1.3e-05 0.15 13.0 7.9 1 11 588 598 588 602 0.94
15 17 1.2 1.3e+04 -2.8 1.3 15 18 613 616 612 617 0.84
16 17 0.028 3e+02 2.4 21.5 3 18 629 645 628 646 0.87
17 17 0.00033 3.6 8.5 12.5 1 16 687 701 687 707 0.85

Sequence Information

Coding Sequence
ATGGCTAGGAGGTACCGTGATGCTGCCGCCAAGTTGCAAGAAAACGTTAAAAAACACTTGcaaataataaaacatgaaGTGTCTTCTTCGGAAGACGAAGAGCCGTTTGAACAGAATGTCCTGGATGGCGTGTTCCAAAGCTATTGGCGGGGCGGTGGAGACACGCAGATGTTGGAGAGAACCAAAAATCTTCTCGAAGAGGCGATCAGTGGTAGGTCCGTAACTTGCTTAATATGCATCGGCTCCATAAAGCGGGCGGACGCGATATGGACTTGTGACCACTGCTACTGTTATTTCCACCTCTCTTGTATTCAAAAGTGGTCAAATGACAGCATCAGCTTACGTAGTGAAGAGCACCATGGCCCGATAGCAGTTTTCCGACCCAAGAAAATAGAATGGTGCTGTCCTAAATGCAGACATTCCTATTCTAAAGACGAAATCCCCAGAAGGTACCGCTGCTTCTGTGGCAAAACTGACGATCCAGAACATCATCCTTGGTTGATTCCCCATACATGTGGAGAAGTTTGTGGGAAGAGGTTATCTTTAGGAGAGAGTTGCAAGCACAAGTGCTTGCTGCTGTGCCACCCAGGCCCCTGCCCTCCATGTCCACAGACAGTGAATGCGGCATGCTATTGTGGCAAAGAACGGAAGAGAGTTCGATGCAGTGCCTCTCTCTGGTCATGCCAGCAACAATGCAACAAGATATTGCCCTGTAAGTCACATAAATGTGCAATCGAATGCCACGATGGAGACTGTCCTCCTTGCACCTACACAAGCGTGCAACCCTGTCAGTGTGGAGCTGAGAAAACAAAGAGACCCTGCAATGACCTCATATGGCAGTGTACAAAGCAATGCAACAAACCATTAGCTTGTGGATATCACAAATGTGAGAAAATATGTCACACTGGAAGTTGTGGTTCATGCCCACACTCTGGTGTACAGTCTTGTCCGTGTGGCTCCAATGAGCATTTCATACAGTGTCCTGATGTTATGGAAACTTGTGTCAGTACTTGTGGGAAGAAACATGAAGATTGTGAACATAACTGCCCGGCAAGATGTCACAAGGGCCCTTGTCCGCCTTGCCAAGTTTTGATAGAAAAACAATGTCAATGTGCAACTCACACTAGATCACTTCCGTGTAGCAAAGAATTCAGGTGTGAAACAAAATGTAGAGGCATCAGACCATGCGGAAAACATGGCTGCGGACGCAAATGCTGCAATGGAAACTGTCCTCCTTGTGAAAAGATATGTGATAAGCCTCTCCAATGTGGCAGACATAAATGCACCACCGTTTGCCACCACGGTCCTTGCTACCCGTGCCCATTGGAATCTAAAGTAACTTGTCGCTGCAAGGAGACTTATGTAACTGTTCCTTGTGGTAGAGAAAAGCACACACGCCCACCAAAATGTAATCTTCCTTGTAAGATTAAGTATAAATGTGGACATGTTGAAGAAAATAAACATACTTGTCATTTTGGTGACTGTCCTCCATGTAAGgctgtttgtaacaaaaaatatgaGTGTGGACACAACTGTGTGGCAACATGTCATGAATATGTGCTGGTTGTTTTTAAACAAGTGGAGAAGCCTGCCACGCCGTGGGAGATTCAGCCTTCTAAAACTAAAATTGTGAATCTCGATTGCCCACCTTGTGAGGCCCCTGTCTTGGTCACATGCTTTGGGGAACACGAGACAGACTACCAGCCATGTCACACGGCAACCCGCAGACCCTGTGGCCGTGAATGTGGCAGGCCACTCTCGTGTGGAAATCACACATGTGAACTTCTCTGTCATCTGCATGGACAAGATGCTGACTATCCAAATGTGCCTTATACTTGCAAGCCATGTAACAGGGAATGTCTGAAAATCCGTCCTGAGAAATGTACACATAGGTGCTCAAAATGTGGCTGTCATCCCGGACCGTGTCCACCTTGTGAAATCTTGGAAAGAATACCATGCCACTGCAAAGTGACAGAAATGTATATGCGATGTAGAGAGCTGGCAGCAACAACAGAAGAAAGTCTGAGCTGCAAACAACAGTGCCCCAAGAATTTAGAGTGTGGTCATCGCTGCAAGAAGATTTGTCACTCGGAACCATGTCATGATAACCAGACATGtttaaaaaagacaaaaataaattgccCTTGTGGCCATTTGAAAAAAGAGGCACCATGCACCTCTGTCAGGAACAGCGAAATACTGGTGAAGTGTGATGAAAGCTGCGAAGCTAAGAAAGCTGCTGCTAAGTTGGAaagagaaaaagaagaaaagcgTTTGAAGGAAGTGGAACTAGAGAAAAATCGTAGAGAATTAGAAGAGTATGAATGGAAATTGAGTGGTAAGAAGAAGAAGTATAAAGAGAAGAAAGTTGTTTCAAACAGAGATGACAGAAATTTTCTGCAAAAATATTGGGTTCCTATTTTGTCTATACCAGTGCTGATTGTAGCTGCtatttattacatatttaaTCCTAATATCTGA
Protein Sequence
MARRYRDAAAKLQENVKKHLQIIKHEVSSSEDEEPFEQNVLDGVFQSYWRGGGDTQMLERTKNLLEEAISGRSVTCLICIGSIKRADAIWTCDHCYCYFHLSCIQKWSNDSISLRSEEHHGPIAVFRPKKIEWCCPKCRHSYSKDEIPRRYRCFCGKTDDPEHHPWLIPHTCGEVCGKRLSLGESCKHKCLLLCHPGPCPPCPQTVNAACYCGKERKRVRCSASLWSCQQQCNKILPCKSHKCAIECHDGDCPPCTYTSVQPCQCGAEKTKRPCNDLIWQCTKQCNKPLACGYHKCEKICHTGSCGSCPHSGVQSCPCGSNEHFIQCPDVMETCVSTCGKKHEDCEHNCPARCHKGPCPPCQVLIEKQCQCATHTRSLPCSKEFRCETKCRGIRPCGKHGCGRKCCNGNCPPCEKICDKPLQCGRHKCTTVCHHGPCYPCPLESKVTCRCKETYVTVPCGREKHTRPPKCNLPCKIKYKCGHVEENKHTCHFGDCPPCKAVCNKKYECGHNCVATCHEYVLVVFKQVEKPATPWEIQPSKTKIVNLDCPPCEAPVLVTCFGEHETDYQPCHTATRRPCGRECGRPLSCGNHTCELLCHLHGQDADYPNVPYTCKPCNRECLKIRPEKCTHRCSKCGCHPGPCPPCEILERIPCHCKVTEMYMRCRELAATTEESLSCKQQCPKNLECGHRCKKICHSEPCHDNQTCLKKTKINCPCGHLKKEAPCTSVRNSEILVKCDESCEAKKAAAKLEREKEEKRLKEVELEKNRRELEEYEWKLSGKKKKYKEKKVVSNRDDRNFLQKYWVPILSIPVLIVAAIYYIFNPNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00802512;
90% Identity
iTF_00354770;
80% Identity
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