Carc004253.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072058.1:14231520-14239771[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.018 1.4 10.4 0.6 3 23 210 231 209 231 0.90 2 23 0.047 3.5 9.1 0.6 1 22 609 630 609 630 0.95 3 23 6.9 5.1e+02 2.3 0.3 1 22 673 694 673 696 0.82 4 23 2.8 2.1e+02 3.5 0.4 1 13 705 717 705 725 0.86 5 23 0.013 1 10.8 0.0 3 23 735 756 733 756 0.91 6 23 0.059 4.4 8.8 0.1 3 23 776 797 774 797 0.95 7 23 0.0022 0.16 13.3 3.4 1 23 803 826 803 826 0.95 8 23 0.13 9.5 7.7 0.0 1 23 852 875 852 875 0.90 9 23 0.019 1.4 10.3 3.4 1 23 880 902 880 902 0.97 10 23 0.00086 0.064 14.6 0.4 1 23 908 931 908 931 0.95 11 23 0.016 1.2 10.6 2.7 1 23 943 965 943 965 0.98 12 23 0.0015 0.11 13.8 4.0 1 23 1009 1032 1009 1032 0.96 13 23 0.004 0.29 12.5 1.8 1 23 1092 1115 1092 1115 0.96 14 23 0.0011 0.084 14.2 2.1 2 23 1139 1161 1138 1161 0.95 15 23 0.04 3 9.3 0.1 2 23 1167 1189 1166 1189 0.94 16 23 0.01 0.75 11.2 0.2 1 21 1233 1253 1233 1254 0.95 17 23 0.0013 0.094 14.1 0.6 1 23 1264 1286 1264 1286 0.93 18 23 9e-05 0.0067 17.7 0.3 2 23 1378 1400 1378 1400 0.93 19 23 1.8e-07 1.4e-05 26.1 1.1 3 23 1407 1427 1406 1427 0.98 20 23 0.0049 0.37 12.2 0.1 1 23 1445 1468 1445 1468 0.93 21 23 0.12 9.2 7.8 0.0 1 23 1489 1511 1489 1511 0.97 22 23 0.028 2.1 9.8 0.6 1 23 1517 1540 1517 1540 0.95 23 23 0.00031 0.023 16.0 0.6 1 23 1548 1571 1548 1571 0.96
Sequence Information
- Coding Sequence
- ATGACTGTGAATTACGATCGTGTTTGTAGACTGTGCTTGTCATCTCGATGTGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGATCCTCCTGTCCTCGCCTCGAAAATCAAAGATTGCGTGTCGGTGCAGatacgCGAGAATGACGACCTGCCGACGAACGTCTGCAGGAAATGCTTGGACAATGTCAACAACTGGCACATATTTAAGGCTGTGTGTGAAAGGAcccaaaacaaattacagtcTCTGAATAACAAGGGCAACAGCCAACTAGAAGAGttGAAAATCAAAAGTGAACCTCTGTCTGATGAAGCCTATGATGATGGAGTGGTCATTGATGGATCATACCCTGACATTGAGAATGCTGGCCCATCAAGCAAACTGCAGCTGGAGGGTCCCCCCATTTTGGCTTCACTGGGGCTTACACCGAGAAGTGATAAGGGCATGGATAGTGAAAAAGACGAGGATTATGAAGAGGAAGAAGATCGAGAAGAAGTGGCGGAGCAGCAATCTTATAGAAGTGTTCCGAATATGCCTGAGGTTTCCATCACGGTCATGCGCCCGACTGGCGAGACGCTACACGCGCGTCAAGGTATTCAGCAGATCGCCTCCAAGGACTGTCTCGTTTGCGGCCGCTCCTACAGATACTCCCACAACGCACGCAGACACGAACTGGGCGCTCACGGCTTCGATAGGTACACTAACAAAACcacaaataaaaaatcatcCCACGGTCACATGTTCCCACAACCCAAGTTTAGACCCAATCCTTTCAACCCAAAAGCGCGCTTGATGCCGAACCCTATCAGCCACAAAATGCAATTAATGTCAAAATCGGCTCCAACTAAAATGATGTCACAGAAAGTTGTGGCGCCACCCAAACCCATCCCTATCAGAACTGCAAAAGCCGCCCAAAACAATCTACCATACCCACTTCGTATCAAAGCTTTAAAAGATTTGCAAATAAAGAAAAAGGAGCCACAAATATTGAAAACGTTGCTTACGTCGAAACCTGAAGTTTTAGTATCCGAACCTGAAATAATAAACTCTGGACCGGAAAGTCCTGAAACCTTGATTTCGGAACCAGAAATAGCATCTTTTCAAGTGGAAACAATTTTGTCGGAGCCCGGTGGATTTATTAATCAATCCCATGATGACGAAGAGATGGACGATGATAACAATCAAGAACAAAATTATGACACTGTTGACATGGAATCTGATAATGAAATCGAAATAGCGCGACAGCAAGAAGATAAAATCGATGTTGAAGAGAACCATATTGAAAACGATGCTGAAGAACTCCCACAAGGTGATGACGTCAATCTAGAAGATGAGCATGTAAAAGAACGTAAGTACGCAGATAATGGGGACAGTCAAGACATGACTGCTGAGAATGATATTGATGCAGAGCAAGAGCACGATGAGAATGCTAAAGAACAAGAtgaagataataataaagaaaatatcgaCCAAGATGCTAATCCTGAAGACAATGAAGATGACGGAGATTTGCCCCCTATGGGCATCGCTCCCGTGGTTGAGATTAATGAAGACTTGCAAAATAATTCTTACAACAGCGAAGGAAATGAGGAAGAAGACCTCGACGAGACTGCCGATCCCAATGACACGGTCGATGTAAAAGCTTTGGATCCAGATAAAGTGTATGTTACGAAAACTCAGAAGGAGTTCATTCTTAAATACCGCGATATCATTGAACAAATCAATACCAAGCTCTGTCTTTGTTGTAATAAGGAACATCCGCGCAGAAAAGCTGTAATACAACACTTGCAGAAAAACGGACACAAAGTTCCCAAACACACTTGCTACAATTGTGTGGTTACGTTCACTCATATTGGAGCTCTGCTCAGCCATATGAGATCTAACACATGCACTgatctatggaaaataatttataacgaGAACGGAATCACTGATGACCAGGTTTTGGAAGATGAACCAGTGCTGGATACTAAAGCACAGTATAAAGACATTCTCAATGCAAGGTCTTACGCTTGCAAGTTGTGCCCAGCAAAATTCCAATTGAAACAATTTATAATGAAGCATGTTTTAGACGTTCACGAAGACGGTCAATCGCGAGTCCCTCACTCCTGCGTGCATTGCGGTCTGCGCTTCAAGGAAAAGAATATCGGAAAAAAGCACATCCGCAACGGAGATTGTACCGTGTACATCGCTTGTGAGATGTGTCCGGAAAAATTCTCGAACGCACAAGATTTCAACGAACACGCCATGGCCGTGCACGCTGGCAATTTCGACCCCGACAGTCAGAACAAGTGCGTCGACGGCAGACCAACGGATTGCCCTATTTGCGGAAAGAAGAACGGCAGCTATCCGAATTTGGTCAAACATCTGAGAGCGATACACAACGAGGAGAAGCCTCACCACTGTCAACACTGCGATGCCAAATTCGAACAAGCGGGCGAACTCAACAAGCACATCTACATGGAGCACTCCGATCGCATGCTCGGCATGACGTCCGCCGAGCCGGACATGTCTATAGTGAAGGAGGAGGCCGAGGAGTACCACTACTCGTGTACGGAGTGCAACGCCATCTTCGAGACCGTCGACGCCTGGACAGACCACCAGGTCGCCGAGCACAACCAGGTCGCTCACCACTGCGACCAGTGCGAAAAGAAATTCTTGCGCCCGTCGGAACTCGCCGAACACAAGAACACCCATTTTCGAGTTAAATTCTATTCGTGTAACATTTGCAATAACTCGTACAGCACACCGCAGAAACTAACCGAACACGTCCAGCAAGCTCACCCTGGCGCTCCCATTCGCAATTTAGACACCGAATTTCACTGTGAAATATGCATACGGAACTTCAAGAGTCGTCAGGCGTATTCCAATCACATGCGCATTCACGCTAAAGTGCCTACAACCAACAGAAAGCCCGGGGCACCGAAGGGTTTCCCACCTCAGATAATAGGAAAGCCCATTCGCCAATTCACATCTTTGCAACCAGGATTCAGTCCTTTCGTCCCGAACGCCCCTTACTGCTGTGACATTTGCGGGAAAGGATTCATGCATAAGAAAAATATATGGAAGCACAAGAAGGTGTTGCACGCTGATATTGTCAACGACAGGGTCGATAGCGAGGAAAATACTATGCACGCGTCTACAGAAGAAGACGAATATAATGTGGACGAAAACGGCGCGATTCTGTCGACTCCGCAGTTTAATAGTTTCAACTTCACAAACATACCCAACAACACGCCACAGACGTCGCAGGACGCTCTTCCGTTCTCCTGTGAGCTATGTTACAAACGCTTCCCACTCAAAACGAGCTTATGGAAGCACAAGAGAGCCAAACATGGGATCACTTACGGCAGCGAAGGTGGGTCCGACGGGCAACCGGCGCAGACGCCGTCAGAAAGCAGATCTAGTTGCACGATATGCAAAATCACATTTTCGGATAAGAAATCTTATTACCGCCACAGGAAAAATGTCCACAAGACCTCCATACAGATGTGTAAGATTTGTGGAAAACCACTCAGTTCTACATTAGAACTGTACGAGCATCTGAAAGCTGCCCACGCCCGTGAACTGTTGGGTTACGACGCCACTCAAGGAACGAGCAAGTCTCAAGACGTGGTACCAGAAGCGGAGGCGGAATACGAACCCGATCAAGATCTCGTGGACCCCAGTGCCGAGTTCCAAGCGCGGTACCCTTGCGACACGTGCGGCAAACAGTTCGTCGGCCTGTTGGCTCTGCAAAACCACCAGTGTATCAATCAGATACAATCGCAGCCGCAGACGTTCGACTGTGAGATCTGTCACAAAAGCTACACTTCGATCGCCGCTCTCAAGAGCCACCGCGGTTGGCATCTGAGGTCTCCCGACGGCAAGGCGGCCGCCAATAACACCGGGCTTTGGATGCCTCAGAACAAAGTAACGACAAAGATAAGTAAACACGAGGTCATCGAGACCACACCACCGGTGACTCGCGCGACGCAGCCGACGGCGACGACCAGCGCGCCCAAGAGAAGACTACCGCCCGAGGTTGAGGTGACCGTCGTCAACCCGAACAAGAAGTTGCGATCCGACGACTCGCTCGAGATGGAGCACCAGAACAGCTTGTCCGGCGGACCCGACGACAGGTACTGCAACATTTGCGATAAAGAGTTCACCAAGCGAGCTGCGTACCAGCGGCACATGGACGAGGTGCATCAACCGAACTCGGTGTTCTGTCCGGTCTGCGATAAGAGCTTCACCCGAAAGTCCACACTTATCGTGCACATGAAGAAGCACTACGAAGGCGGTGAGGGATCGTCGAGTGCGGGGCAGATGGACGACGACGGGCACGCCTGTGACGTTTGCGGCGCTCAGTTCGAAAGTCCGAAGGCGTTGAACCAGCACAAGGCGATGGCGCACGCTGAGGACTCCGGGGAAtcggacgacgacgacgacggcgCCGTGCAGCAGCCGGGCGAGTTCACGTGCGGACAGTGCGGCGACGGTGTCGCTACGCCACGCGACCTCATCGCGCACCGCACGATGCACGCGACGCCTACCAAGTTCTTCTGTAACATCTGCAAGGTGTACTTCGCGCGCGCGCTCGACCTGTCCTCGCACACCCGAGCCAGGCACGCCGACAACGAGAAAGTGTTCTTCCCCTGCGCCATGTGTGACCGATTCTATATGAACAAAAAGAGTTTGCAGCGGCACATTGAAATGATGCACTGA
- Protein Sequence
- MTVNYDRVCRLCLSSRCELLPIFPTTSSDDSDPPVLASKIKDCVSVQIRENDDLPTNVCRKCLDNVNNWHIFKAVCERTQNKLQSLNNKGNSQLEELKIKSEPLSDEAYDDGVVIDGSYPDIENAGPSSKLQLEGPPILASLGLTPRSDKGMDSEKDEDYEEEEDREEVAEQQSYRSVPNMPEVSITVMRPTGETLHARQGIQQIASKDCLVCGRSYRYSHNARRHELGAHGFDRYTNKTTNKKSSHGHMFPQPKFRPNPFNPKARLMPNPISHKMQLMSKSAPTKMMSQKVVAPPKPIPIRTAKAAQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPGGFINQSHDDEEMDDDNNQEQNYDTVDMESDNEIEIARQQEDKIDVEENHIENDAEELPQGDDVNLEDEHVKERKYADNGDSQDMTAENDIDAEQEHDENAKEQDEDNNKENIDQDANPEDNEDDGDLPPMGIAPVVEINEDLQNNSYNSEGNEEEDLDETADPNDTVDVKALDPDKVYVTKTQKEFILKYRDIIEQINTKLCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNENGITDDQVLEDEPVLDTKAQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPHSCVHCGLRFKEKNIGKKHIRNGDCTVYIACEMCPEKFSNAQDFNEHAMAVHAGNFDPDSQNKCVDGRPTDCPICGKKNGSYPNLVKHLRAIHNEEKPHHCQHCDAKFEQAGELNKHIYMEHSDRMLGMTSAEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHFRVKFYSCNICNNSYSTPQKLTEHVQQAHPGAPIRNLDTEFHCEICIRNFKSRQAYSNHMRIHAKVPTTNRKPGAPKGFPPQIIGKPIRQFTSLQPGFSPFVPNAPYCCDICGKGFMHKKNIWKHKKVLHADIVNDRVDSEENTMHASTEEDEYNVDENGAILSTPQFNSFNFTNIPNNTPQTSQDALPFSCELCYKRFPLKTSLWKHKRAKHGITYGSEGGSDGQPAQTPSESRSSCTICKITFSDKKSYYRHRKNVHKTSIQMCKICGKPLSSTLELYEHLKAAHARELLGYDATQGTSKSQDVVPEAEAEYEPDQDLVDPSAEFQARYPCDTCGKQFVGLLALQNHQCINQIQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTTKISKHEVIETTPPVTRATQPTATTSAPKRRLPPEVEVTVVNPNKKLRSDDSLEMEHQNSLSGGPDDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSSAGQMDDDGHACDVCGAQFESPKALNQHKAMAHAEDSGESDDDDDGAVQQPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01092294;
- 90% Identity
- -
- 80% Identity
- -