Carc025354.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:3001363-3017265[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0028 0.21 13.0 0.2 2 23 14 35 14 35 0.97 2 24 0.053 3.9 8.9 0.5 3 23 69 90 68 90 0.97 3 24 0.00016 0.012 16.9 0.1 1 23 99 121 99 121 0.98 4 24 0.00025 0.018 16.3 2.6 1 23 126 149 126 149 0.97 5 24 0.014 1 10.8 0.2 1 21 158 178 158 179 0.95 6 24 0.014 1 10.8 0.2 1 21 195 215 195 216 0.95 7 24 0.014 1 10.8 0.2 1 21 232 252 232 253 0.95 8 24 0.014 1 10.8 0.2 1 21 269 289 269 290 0.95 9 24 0.014 1 10.8 0.2 1 21 306 326 306 327 0.95 10 24 0.014 1 10.8 0.2 1 21 343 363 343 364 0.95 11 24 0.014 1 10.8 0.2 1 21 380 400 380 401 0.95 12 24 0.014 1 10.8 0.2 1 21 417 437 417 438 0.95 13 24 0.014 1 10.8 0.2 1 21 454 474 454 475 0.95 14 24 0.014 1 10.8 0.2 1 21 491 511 491 512 0.95 15 24 0.014 1 10.8 0.2 1 21 528 548 528 549 0.95 16 24 0.014 1 10.8 0.2 1 21 565 585 565 586 0.95 17 24 0.014 1 10.8 0.2 1 21 602 622 602 623 0.95 18 24 0.014 1 10.8 0.2 1 21 639 659 639 660 0.95 19 24 0.014 1 10.8 0.2 1 21 676 696 676 697 0.95 20 24 0.014 1 10.8 0.2 1 21 713 733 713 734 0.95 21 24 0.014 1 10.8 0.2 1 21 750 770 750 771 0.95 22 24 0.0037 0.27 12.6 1.0 1 21 780 800 780 803 0.95 23 24 0.00075 0.056 14.8 0.2 1 23 809 831 809 831 0.97 24 24 3.5e-05 0.0026 19.0 0.6 3 21 842 860 840 861 0.95
Sequence Information
- Coding Sequence
- ATGGTGGAACGTCGCTGCATCGCTGCATTAAACGGTGAACAATGCACGACCTGCACGCTGCGCTTCGCGAGCCCTGCCTCGCTGCGACTGCACGTGGCGAGTCACACGCAGCGGTATCTGTGTCGCAAGTGCGGAGAGACCCTCAAGCCGCGCGCCAAGCGCCGCCACCCCTGCCTCGAGCCGGCGCCGCCGCAGAGCGCCGCGTGCCATCTGTGCGGGAACTTGCTCAAGGACGCGAACGgtctgcagcagcacctgcggcgcgtgcacgcgagccgcagcagcgggcggcgctacgcgtgcaacgtgtgcggcgacagctacgagcggcaggaggcgctgcgcacgcacatgatAAAGCACATAACCCGCAAGTTCCACTGCGACCAGTGCCCCGCCACCTACAGCAGCCCCTACACGCTCACGCAGCACAAGCGTACCCGCCACGccgagcacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACccgccacgccgcgcacgccgcgcacgtctgccacgcgtgcggcgcgcgctacGCGACCAGGAAGAGCCTGCTGGCGCACGTGCGCGACACCAGCGACCACGCCGCCACCACATACGAGTGCCCCATCTGCAGTCGGGTTTGCCCCAACGAGAGGTCGCTCGCCTCGCACATCCAGTGCGTGCACTCGGCGCGCAAGGACTACGCGTGCTCGCAGTGCCCCGCGCGCTACACCAACAGGAAGTCGCTCGTGCGGCACGTCGCGTCGCACACGCGTTTAAAACCCCACAGGGTTGTCATCTGTCACCTGTGCGGGAATAGCTTTAAGGACAACAGCAAACTGAACAGGCATCTTCGAGAAGCGTGCAAAAAGACAAGAGAAGAAAATCTAGTAGCTATGTATGACTAG
- Protein Sequence
- MVERRCIAALNGEQCTTCTLRFASPASLRLHVASHTQRYLCRKCGETLKPRAKRRHPCLEPAPPQSAACHLCGNLLKDANGLQQHLRRVHASRSSGRRYACNVCGDSYERQEALRTHMIKHITRKFHCDQCPATYSSPYTLTQHKRTRHAEHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTRHAAHAAHVCHACGARYATRKSLLAHVRDTSDHAATTYECPICSRVCPNERSLASHIQCVHSARKDYACSQCPARYTNRKSLVRHVASHTRLKPHRVVICHLCGNSFKDNSKLNRHLREACKKTREENLVAMYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00353729;
- 90% Identity
- iTF_00353729;
- 80% Identity
- iTF_00353729;