Carc017717.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072072.1:6125214-6149827[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.4 1.7e+02 3.8 1.6 1 20 7 27 7 28 0.91 2 22 0.00039 0.029 15.7 0.0 2 21 35 54 34 55 0.94 3 22 0.18 14 7.3 0.3 1 12 212 223 212 232 0.86 4 22 4.5e-05 0.0034 18.6 0.3 1 23 345 367 345 367 0.98 5 22 0.0063 0.47 11.9 1.8 1 23 382 404 382 404 0.98 6 22 0.00024 0.018 16.3 1.9 3 23 459 479 457 479 0.96 7 22 0.0016 0.12 13.7 2.4 1 23 495 517 495 517 0.99 8 22 1.4e-06 0.0001 23.4 4.0 1 23 523 545 523 545 0.98 9 22 0.0054 0.4 12.1 6.2 1 23 551 573 551 573 0.97 10 22 1.6e-05 0.0012 20.0 0.4 1 23 579 601 579 601 0.98 11 22 0.00047 0.035 15.4 0.1 1 23 605 627 605 627 0.98 12 22 0.001 0.076 14.3 0.1 1 23 635 658 635 658 0.96 13 22 0.18 13 7.3 0.0 6 23 673 690 671 690 0.97 14 22 0.001 0.076 14.3 0.1 1 23 698 721 698 721 0.96 15 22 0.18 13 7.3 0.0 6 23 736 753 734 753 0.97 16 22 0.001 0.076 14.3 0.1 1 23 761 784 761 784 0.96 17 22 0.18 13 7.3 0.0 6 23 799 816 797 816 0.97 18 22 0.001 0.076 14.3 0.1 1 23 824 847 824 847 0.96 19 22 0.18 13 7.3 0.0 6 23 862 879 860 879 0.97 20 22 0.001 0.076 14.3 0.1 1 23 887 910 887 910 0.96 21 22 0.18 13 7.3 0.0 6 23 925 942 923 942 0.97 22 22 0.001 0.076 14.3 0.1 1 23 950 973 950 973 0.96
Sequence Information
- Coding Sequence
- ATGGATCTTCCAGTGCTGTACAGCTGTCCACTTTGTTGTCATAATACGTTTAACTCCAAACAATCGCTTGCGGAACATTTGGTCCAGATATCACTGAACATTGTATGCACAATATGTAACCAAAGTTTTTCATCATTGGAACTCCTCACTGAACACCTTAAAGTTGAAAACtgcgattttcaaagtaatgaTGAGAGTGAAATCTTGGGAAATGACTTGCCTAACATTGTCAAAGTTGAACATGACATGTACTCTGATAGTACGCAAGACAATGAcggtaaacaaaaaaaaagtacagAAAACAATGctgtaaacaaattaaaattaactacCATTGAGGATGACACGGGCAGTAAAATGTATGTAGAGCTGTTAAGCAAACAGTTAACAAAACCATGTCTGCAGACGCAAGAAATGAAACTGGTCAGGGAAGATGGGCAGAGTAAATACGTCATCCTTGCAGATGATGGGTCACTGATCAGCCAAGACGTCACTATAGTCACTAGGCAAAATAATGATGGAACAATTTCTTTGACTGCACTGAAAGAAACAGAAAGTTCTGAAAATGAAGATGGAAAAATGCCTGATCCAGCAGTGCCTGAGGATGAGGCAGGTGATAAAGACGAAGAACTCTACACATGCAACACATGTGGAGTTTCGTTCTCCTCTGTTCTGGAACACATTCAGAACTATCACACAGATGAAGATGTTGTTGTTCATgatACCGGCAGTGCCGATTCATTAGAATTTGAATCTACAGGAAACAACAAAACCGTAGTAGATAAACAGTCCTCAAGGAGAATGATAACAGAGACTGGTAACATTATAGAAGCACCACCTCCTCTGTCAGTCACTACAAATCAGTTGAATCAGGCAAATCAAATAGataaaaatagcGTATACCACAAGGTAGTGATGAAGGAGATGCAGACGACGGGAGGTAACAAAGTAAAGCTGTACAACTGCCTCACTTGCAACATCTATGTCACCACCCTGGATGAGTTCAAACAGCAGCCGTGTAAAATCTTGAAGTACCAATGCCCACAGTGTCCAGCAGcctatgaaaattcaaaatccCTATGTGCACATATGAAAGCACATAAATTGAGAAACACAGAGTGTGCCCCCGTCTTGCCGCTAAAATTCGAATGTGAAATTTGCAATACACAGTTCCTCACTAGTAAATCTCTGAAATTACACAAGAAAATGCACGAACCTATCAAATCCCGTCCAATAGATCCTCCTTTAGAGACGTCGGAGGGCATGCCGGCGAGCACCGACAAGTACCTGTGCGGCATTTGCGAGAAACTAATACCCATAGACTATAGATTAATACACCAAAACTCGCACAATACCAACAACAAGAAAATGAACTGTGATGTATGCAACAAGAAGTTCCATTCGAAAGAGTATCTGGAAATGCATATGAGTGTACATAAGATAGATAAGGCGCCAATTGAAAAGTCAGACAAATTGCTGCCATATAAATGTTTATATTGTGAAAGGAAGTTCGCACGGCCCCACGAGAAAGTAAAACATGAAAGGATACATACAGGTGAGAAGCCGCACGAGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACCGGCGCGCGCCCCTACGCGTGCCCGCACTGCAATAAGAGGTTTAAAGCGCACAGCGTGTACAACCACCACCTGCTGACGCACTCGGAGGTGCGCGCCTACAAGTGCCCCTTCTGCCCCAAGGCGTTCAAGACCTCCGTGCAGCTGGCGGGGCACAAGAACTCGCACACCAAGCCCTTCTCGTGCCAGCAGTGTAACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGATCCACACGCGGCAGAACAGCCTCAAGTTCGTGTGCTCGCTGTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCAAGCAGGTGCACAAGCAGGACATCGACACCGCGGAGAACATTGTGAGTACTGCTTGTGACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGATCCACACGCGGCAGAACAGCCTCAAGTTCGTGTGCTCGCTGTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCAAGCAGGTGCACAAGCAGGACATCGACACCGCGGAGAACATTGTGAGTACTGCTTGTGACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGATCCACACGCGGCAGAACAGCCTCAAGTTCGTGTGCTCGCTGTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCAAGCAGGTGCACAAGCAGGACATCGACACCGCGGAGAACATTGTGAGTACTGCTTGTGACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGATCCACACGCGGCAGAACAGCCTCAAGTTCGTGTGCTCGCTGTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCAAGCAGGTGCACAAGCAGGACATCGACACCGCGGAGAACATTGTGAGTACTGCTTGTGACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGATCCACACGCGGCAGAACAGCCTCAAGTTCGTGTGCTCGCTGTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCAAGCAGGTGCACAAGCAGGACATCGACACCGCGGAGAACATTGTGAGTACTGCTTGTGACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGATCCACACGCGGCAGAACAGCCTCAAGTTCGTGTGCTCGCTGTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCAAGCAGGTGCACAAGCAGGACATCGACACCGCGGAGAACATTTCATTGCTTGAAACAAAGGACTGGTTGATTCAGGGAAACACAGACGTCGATTCAGAAGTCATACCGCTCAACAAAGACTTGCCGCAAGATATGAATGAATTGGGTATACATACCGAACTGATCATCCCGTAG
- Protein Sequence
- MDLPVLYSCPLCCHNTFNSKQSLAEHLVQISLNIVCTICNQSFSSLELLTEHLKVENCDFQSNDESEILGNDLPNIVKVEHDMYSDSTQDNDGKQKKSTENNAVNKLKLTTIEDDTGSKMYVELLSKQLTKPCLQTQEMKLVREDGQSKYVILADDGSLISQDVTIVTRQNNDGTISLTALKETESSENEDGKMPDPAVPEDEAGDKDEELYTCNTCGVSFSSVLEHIQNYHTDEDVVVHDTGSADSLEFESTGNNKTVVDKQSSRRMITETGNIIEAPPPLSVTTNQLNQANQIDKNSVYHKVVMKEMQTTGGNKVKLYNCLTCNIYVTTLDEFKQQPCKILKYQCPQCPAAYENSKSLCAHMKAHKLRNTECAPVLPLKFECEICNTQFLTSKSLKLHKKMHEPIKSRPIDPPLETSEGMPASTDKYLCGICEKLIPIDYRLIHQNSHNTNNKKMNCDVCNKKFHSKEYLEMHMSVHKIDKAPIEKSDKLLPYKCLYCERKFARPHEKVKHERIHTGEKPHECEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMEIHTRQNSLKFVCSLCGASYARAFALKDHVKQVHKQDIDTAENIVSTACDRPFASLYAVRVHMEIHTRQNSLKFVCSLCGASYARAFALKDHVKQVHKQDIDTAENIVSTACDRPFASLYAVRVHMEIHTRQNSLKFVCSLCGASYARAFALKDHVKQVHKQDIDTAENIVSTACDRPFASLYAVRVHMEIHTRQNSLKFVCSLCGASYARAFALKDHVKQVHKQDIDTAENIVSTACDRPFASLYAVRVHMEIHTRQNSLKFVCSLCGASYARAFALKDHVKQVHKQDIDTAENIVSTACDRPFASLYAVRVHMEIHTRQNSLKFVCSLCGASYARAFALKDHVKQVHKQDIDTAENISLLETKDWLIQGNTDVDSEVIPLNKDLPQDMNELGIHTELIIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00354352;
- 90% Identity
- iTF_00354352;
- 80% Identity
- -