Carc001870.4
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- USP
- Assembly
- GCA_036785405.1
- Location
- CM072056.1:12541688-12567052[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.9e-20 1.2e-16 62.0 0.4 210 335 571 708 564 722 0.77 2 18 1.2e-06 0.005 17.2 0.0 299 335 722 758 709 772 0.85 3 18 1.4e-06 0.0057 17.0 0.0 299 334 772 807 760 820 0.87 4 18 1.2e-06 0.0049 17.2 0.0 299 334 822 857 808 871 0.85 5 18 1.2e-06 0.0049 17.2 0.0 299 334 872 907 858 921 0.85 6 18 1.1e-06 0.0045 17.3 0.0 299 335 922 958 908 973 0.84 7 18 1.2e-06 0.0048 17.2 0.0 299 335 972 1008 958 1022 0.85 8 18 1.3e-06 0.0054 17.1 0.0 299 334 1022 1057 1008 1066 0.85 9 18 1.2e-06 0.0049 17.2 0.0 299 334 1072 1107 1058 1121 0.85 10 18 1.1e-06 0.0046 17.3 0.0 299 335 1122 1158 1106 1172 0.84 11 18 1.4e-06 0.0059 16.9 0.0 299 334 1172 1207 1159 1214 0.85 12 18 1.1e-06 0.0046 17.3 0.0 299 335 1222 1258 1208 1273 0.84 13 18 1.2e-06 0.0051 17.1 0.0 299 334 1272 1307 1259 1321 0.85 14 18 1.2e-06 0.0049 17.2 0.0 299 334 1322 1357 1308 1371 0.85 15 18 1.2e-06 0.0049 17.2 0.0 299 334 1372 1407 1358 1421 0.85 16 18 1.3e-06 0.0055 17.0 0.0 299 334 1422 1457 1410 1471 0.86 17 18 1.3e-06 0.0054 17.0 0.0 299 334 1472 1507 1457 1514 0.85 18 18 5e-06 0.02 15.1 0.0 299 327 1522 1550 1508 1555 0.86
Sequence Information
- Coding Sequence
- ATGAAAATGCTTACTCTGAACTTAAGGAGATTAAAGCTGGAGTACCACAAGGAAGTGTCCTGGGGCCTGTCTTATACCTTCTCTATACATGTGATATTCCAGAACTCGAACATAACACTATCGCTACCTTTGCCGATGACACTGCCATCATCGCTGTGGGGAATACTCATGAAGAGGCAGTGGGAAAGAATGGATTCCAAGAAACAGGAAAAGGAAGAAAGGAAGACAAAGGAGAAGATGGAGAGATATCTTCAATCAAATTGTGGGACCAAACTGGATGACGGGCTGAACTTAGAGGCGGGCTTCATGTCGCCCATGTCGCCGCCGGAGATGAAGCCCGACACGGCCATGCTGGACGGCATGCGGGACGACGCCACGTCTCCGCCGGCGATGAGGAACTACCCGCCGAACCATCCCCTCAGCGGCTCCAAGCACCTCTGCTCCATATGCGGCGACAGGGCGTCGGGGAAGCATTACGGAGTTTATAGGTTAGTCAACATAGAGACGAGCTTCATGTCGCCCATGTCGCCGCCGGAGATGAAGCCCGACACGGCCATGCTGGACGGCATGCGGGACGACGCCACGTCTCCGCCGGCGATGAGGAACTACCCGCCGAACCATCCCCTCAGCGGCTCCAAGCACCTCTGCTCCATATGCGGCGACAGGGCGTCGGGGAAGCATTACGGAGTTTATAGGTTAGTCAACATAGAGACGAGCTTCATGTCGCCCATGTCGCCGCCGGAGATGAAGCCCGACACGGCCATGCTGGACGGCATGCGGGACGACGCCACGTCTCCGCCGGCGATGAGGAACTACCCGCCGAACCATCCCCTCAGCGGCTCCAAGCACCTCTGCTCCATATGCGGCGACAGGGCGTCGGGGAAGCATTACGGAGTTTATAGGTTAGTCAACATAGAGACGAGCTTCATGTCGCCCATGTCGCCGCCGGAGATGAAGCCCGACACGGCCATGCTGGACGGCATGCGGGACGACGCCACGTCTCCGCCGGCGATGAGGAACTACCCGCCGAACCATCCCCTCAGCGGCTCCAAGCACCTCTGCTCCATATGCGGCGACAGGGCGTCGGGGAAGCATTACGGAGTTTATAGTTGCGAAGGCTGCAAGGGTTTCTTCAAGCGGACCGTGAGGAAGGACCTCACGTACGCGTGTCGTGAGGAGAGGAATTGCATAATCGACAAGCGACAGCGGAACCGATGCCAGTACTGTCGATATCAGAAGTGCCTCGCGTGCGGCATGAAGCGCGAGGCCGTGCAGGAGGAgcggcagcgggcggcgcgcggcgcggaggATGCTCATCCCAGCAGTTCTGTTCAGGAGCTGTCGATCGAGCGGCTGCTGGAGATGGAGTCGCTGGTGGCGGACCCCAGCGAGGAGTTCCAGTTCCTGCGCGTGGGGCCCGACAGCAACGTgcccgcgcggtaccgcgcgccCGTCTCCAGCCTGTGCCAGATAGGTAACGTGCCGCGACCTGGAGCGCTTTATGTATCGAAGCAGAGCGAGGAGTTCCAGTTCCTGCGCGTGGGGCCCGACAGCAACATgcccgcgcggtaccgcgcgccCGTCTCCAGCCTGTGCCAGATAGGTAACGTGCCGCGACCTGGAGCGCTTAATGTATCGAAGCAGAGCGAGGAGTTCCAGTTCCTGCGCGTGGGGCCCGACAGCAACGTgcccgcgcggtaccgcgcgccCGTCTCCAGCCTGTGCCAGATAGGCAACAAGCAGATCGCGGCGCTGGTGGTGTGGGCGCGCGACATCCCCCACTTCAGCCAGCTGGAGCTCGACGACCAGGTGGTGCTCATCAAGGCGTCCTGGAACGAGCTGCTGCTCTTCGCCATCGCCTGGCGCTCCATGGAGTACCTGGAAGATGAGCGGGAGAACATGGACGGCACGcgaagcgccgcgccgccgcagctcATGTGTCTAATGCCTGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGCATGACGCTGCACCGCAACTCGGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCGGAGCTGTCGCTCAAGATGCGCGCGCTGCGCATGGACCAGGCCGAGTACGTCGCGCTCAAGGCCATCATCCTGCTCAACCCAGGTAACACTCGGCAGGCATGA
- Protein Sequence
- MKMLTLNLRRLKLEYHKEVSWGLSYTFSIHVIFQNSNITLSLPLPMTLPSSLWGILMKRQWERMDSKKQEKEERKTKEKMERYLQSNCGTKLDDGLNLEAGFMSPMSPPEMKPDTAMLDGMRDDATSPPAMRNYPPNHPLSGSKHLCSICGDRASGKHYGVYRLVNIETSFMSPMSPPEMKPDTAMLDGMRDDATSPPAMRNYPPNHPLSGSKHLCSICGDRASGKHYGVYRLVNIETSFMSPMSPPEMKPDTAMLDGMRDDATSPPAMRNYPPNHPLSGSKHLCSICGDRASGKHYGVYRLVNIETSFMSPMSPPEMKPDTAMLDGMRDDATSPPAMRNYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARGAEDAHPSSSVQELSIERLLEMESLVADPSEEFQFLRVGPDSNVPARYRAPVSSLCQIGNVPRPGALYVSKQSEEFQFLRVGPDSNMPARYRAPVSSLCQIGNVPRPGALNVSKQSEEFQFLRVGPDSNVPARYRAPVSSLCQIGNKQIAALVVWARDIPHFSQLELDDQVVLIKASWNELLLFAIAWRSMEYLEDERENMDGTRSAAPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIILLNPGNTRQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00353122;
- 90% Identity
- iTF_00353122;
- 80% Identity
- iTF_00353122;