Carc008689.2
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- egg
- Assembly
- GCA_036785405.1
- Location
- CM072062.1:14958677-14978588[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.67 3.7e+03 -1.5 0.1 29 38 116 125 93 127 0.81 2 2 3.5e-16 1.9e-12 47.5 0.1 4 75 157 221 154 223 0.88
Sequence Information
- Coding Sequence
- ATGTCTGAGTGGATCATTGTTAACATGCCGTACGTGGAGTACACGCGGTCGGACGAGCAGGCCAACAAGCAGGCTGcgctgcagcagcagcagcggcagcagcagctCCGGCAGCAGCAGCTCCGGCAGCAAGAGGAGTTGCAACGACAGCGTGCCGTGGCCAAAAAGTCGACGGTCGCGCCCACcaccgcgcagccgccgccgcagacCCCCGCCAGCGCGGAGCAGGTCACCAGCAGAGTTGTGCTATACATCCCATCTACTTCGCATAGCAATAACAAGAAGTCGACGGTCGCGCCCACcaccgcgcagccgccgccgcagacCCCCGCCAGCGCGGAGCAGGTCACCAGCAGAGTTGTGTACTACACGCCTAAGAACGCCGTCAAGCCCCATAAGATGACGCCGCACACGTGCTCGCCCGCCTGCAAGCGCACGGACGTGTTCGCGCTCAAGGACCTGCGCACCTACAACCCGCTCGCCAAGCCGCTGCTGAGCGGGTGGGAACGACAAATAGTGCGGTGGCGCGGGCAGAAGAGAGTGATGTACGTGTCGCCGTGCGGGCGGCGCCTGCGCACCATGCGCGAGCTGCACCGCTACCTGCGCGCCACCGACTCGGAGATGTCCGTCGACCTGTTCGACTACTCGCCCTCCACCAAGTGCCTGGCGGAGTTCGTGCTCAACAAGATCCTCGTGGGCAAGAAGGACTTGTCGCACGGCAAGGAGATCGTGCCGGTGCCGTGCGTCAACTACTACGACGACACGCTGCCGGAGTTCTGCTCCTACAACACGGAGAGGACGCCCACCGCGGGCGTGCCGCTCAACCTCGACCCGGAGTTCCTGTGCGGGTGCGACTGCGAGGACGACTGCGAGGATAAATCCAAGTGCGCGTGCTGGAAGATGACTCTCGAGGGCGCCAGGACCATCGGCTACGACGGTGACGTGGGCTACGTGTACCGCAGGCTGCCCGAGCCGCTGCCCTCGGGGATCTACGAGTGCAACTCCAGGTGTAAATGCAAAAACACGTGCTTAAATCGCGTCGCGCAACATCCGCTGCAGCTCAAATTGCAAGTGTTCAAGACTCTGAACCGCGGGTGGGGCATCCGCGCACTGAACGACGTGCCCAAGGGAGCTTTCCTGTGCGTGTACGCCGGCAACTTGTTGACAGACGCCACTGCTACCTTGGACGGACTGAACGAGGGCGACGAGTACCTGGCCGAGCTGGACTACATCGAAGTGGTAGAGCAGATGAAGGAGGGCTTCGAGGAGGACATCCCCGCCAGCATCAAGGCCAAGGACAAGAAAGCGTTAGCAAATGATGAGGACGACGAAGACGAGGAGTCCTCGGAAGAGGAGGACACGGTCAACAAGAACGAGATACAGGACGACGACTTCGAGCCCGGCTACATCGGGCGCGGTGTCGCTGAGTTCAAtaaacGCTTGAGAAGAAGAGAGTCGAAGATTGAAAAGGCAGATGCTAAACAACAAGAGAaggagaaagataaagatgctAATGCTGAAGACGAGTGCATCACCATCAGCGATGATGAAGAAGTGCGTGAACCATCGTGCTTCACTGCCGCGGCCGGCATGGGAAAGAACGAGTTCATCTCCAAATACAGATCTGTCCGCAAGTTGTTCGGTGAGGACGAGGCGTGCTACATCATGGACGCGAAGGTGCAAGGCAACATCGGACGATATCTCAACCATGCGTGCTCGCCGAACGTGTTCGTGCAGAACGTGTTCGTGGACACGCACGACCCGCGCTTCCCGTGGGTGGCGTTCTTCGCGCTGCACCACATCCGCGCGGGCACCGAGCTCACGTGGAACTACAACTACGACGTGGGCTCCGTGCCCGGGAAGGTGCTCTACTGCCACTGCGGCGCGCCCAACTGTAGGGGGCGCCTCCTGTAA
- Protein Sequence
- MSEWIIVNMPYVEYTRSDEQANKQAALQQQQRQQQLRQQQLRQQEELQRQRAVAKKSTVAPTTAQPPPQTPASAEQVTSRVVLYIPSTSHSNNKKSTVAPTTAQPPPQTPASAEQVTSRVVYYTPKNAVKPHKMTPHTCSPACKRTDVFALKDLRTYNPLAKPLLSGWERQIVRWRGQKRVMYVSPCGRRLRTMRELHRYLRATDSEMSVDLFDYSPSTKCLAEFVLNKILVGKKDLSHGKEIVPVPCVNYYDDTLPEFCSYNTERTPTAGVPLNLDPEFLCGCDCEDDCEDKSKCACWKMTLEGARTIGYDGDVGYVYRRLPEPLPSGIYECNSRCKCKNTCLNRVAQHPLQLKLQVFKTLNRGWGIRALNDVPKGAFLCVYAGNLLTDATATLDGLNEGDEYLAELDYIEVVEQMKEGFEEDIPASIKAKDKKALANDEDDEDEESSEEEDTVNKNEIQDDDFEPGYIGRGVAEFNKRLRRRESKIEKADAKQQEKEKDKDANAEDECITISDDEEVREPSCFTAAAGMGKNEFISKYRSVRKLFGEDEACYIMDAKVQGNIGRYLNHACSPNVFVQNVFVDTHDPRFPWVAFFALHHIRAGTELTWNYNYDVGSVPGKVLYCHCGAPNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -