Carc004443.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
lrrfip2
Assembly
GCA_036785405.1
Location
CM072058.1:18033110-18054225[+]

Transcription Factor Domain

TF Family
LRRFIP
Domain
LRRFIP domain
PFAM
PF09738
TF Group
Unclassified Structure
Description
LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 1.1e-73 1.8e-69 235.2 24.0 1 267 115 375 115 395 0.88
2 25 2 3.3e+04 -16.7 26.9 1 92 396 493 396 498 0.73
3 25 2 3.3e+04 -16.8 26.7 1 92 453 550 453 553 0.73
4 25 2 3.3e+04 -15.4 25.6 1 92 510 607 510 612 0.73
5 25 2 3.3e+04 -13.1 22.6 1 88 567 660 567 669 0.70
6 25 1.1 1.9e+04 -4.5 9.8 1 39 681 719 681 737 0.84
7 25 2 3.3e+04 -16.5 26.6 1 92 738 835 738 839 0.73
8 25 2 3.3e+04 -16.3 26.3 1 92 795 892 795 896 0.73
9 25 2 3.3e+04 -16.0 26.2 1 92 852 949 852 954 0.73
10 25 2 3.3e+04 -15.9 26.1 1 92 909 1006 909 1011 0.73
11 25 2 3.3e+04 -15.7 25.2 1 90 966 1061 966 1064 0.72
12 25 2 3.3e+04 -15.9 25.4 1 90 1023 1118 1023 1121 0.72
13 25 2 3.3e+04 -16.0 25.6 1 90 1080 1175 1080 1178 0.72
14 25 2 3.3e+04 -16.4 26.4 1 92 1137 1234 1137 1238 0.73
15 25 2 3.3e+04 -16.3 26.0 1 92 1194 1291 1194 1293 0.73
16 25 2 3.3e+04 -16.0 26.2 1 92 1251 1348 1251 1353 0.73
17 25 2 3.3e+04 -16.1 25.9 1 92 1308 1405 1308 1407 0.73
18 25 2 3.3e+04 -16.1 26.1 1 92 1365 1462 1365 1466 0.73
19 25 2 3.3e+04 -14.0 22.8 1 90 1422 1517 1422 1521 0.70
20 25 2 3.3e+04 -14.9 23.4 1 92 1479 1576 1479 1580 0.70
21 25 2 3.3e+04 -16.0 25.5 1 90 1536 1631 1536 1634 0.72
22 25 2 3.3e+04 -15.6 25.8 1 92 1593 1690 1593 1695 0.73
23 25 2 3.3e+04 -15.7 25.9 1 92 1650 1747 1650 1752 0.73
24 25 2 3.3e+04 -16.0 25.6 1 97 1707 1803 1707 1804 0.65
25 25 2 3.3e+04 -5.4 11.2 1 45 1764 1810 1764 1828 0.72

Sequence Information

Coding Sequence
ATGGCAAAAAGATCGGAGTTCGCAACACCGGAGAACAGCGATGAAGAAAGCGGTGGTGCGTTTACAGATGGTGATTTTGATGATATTGACGATGAGAATATAGTTGAGCCTAAGGACTATGTTAACGAAACTGTGAATACGAACATTACGGAACCTAACAGTAGTGTTAGCAGTGTAGAAGTACAAGTCGACGGCCTCGCGATGAAGATAAACGTTAATGGTGCAGATTACGAAGATCTTAACAACCAGAGCGCCAGCGAGGAATCCGGAGATTTCTCCAGAGATTCACAGAGCGAGGGCAATACTTCTATCGTTGGAATACTGGGCGGTCAACAGAAACACGCGGAGCAGCGACTggcggcgcggcgagcggcgcgggcggagGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGACAGCAGCGCGAGCAGGAAGACCATGCCGACAAGGCGTACGACATGTATGCAGAGACAGTGGGCCGTCGCAGCGGTGGACGGCTCGCGGCCCTGAGCCCCAGCGTCATGCACTCGCCGCGGAGAAGTTCCGAAGACTCGGACGACGTGCTCAGCATCAAAGACCTCAGGCATGAGCTGAAAGAAGTGGAGGAGAAGTTCCGGAAGGCGATGATCCTCAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGATCGGATAGAGGAGCTGCAGGAAGAGTACGCGCAGTTACAGCGCGAACACCGGGAGAAGTGCTCGTGCTACGAGCGGCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGCGCGCGCGCGGGacgcggtgcgcgcgcgcgacgcggcggcggcggcggcggggcgcgccttcgtggagGCGGCCGGCGCGCCCGACGCGGACGCGGGCGAGGCGTGCGGCAGCGTGCCGCCGCTGGCGCTCGTGTCGCGCGCCTCCGAGCAGCTGCTCAACGACGCGGGCGAGGGCACGCTAGACGTGCGGCTGGAGCGGCTGGTGAGCGCGAAGGCGGCGCTGGAGGGCGAGGTGCGCAAGCTGAAGCTGCAGCTGAacgacgagcgcgcggcgcggcagaACGGCGTCGCCTCGCACCTCGACCGCGACCACGACTCCGAGCTGGAGACGCTGCGCAAATCGGTGGCGGAGGCGAaggggcgtgcggcgcgcgcagaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACCAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCTGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAAGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgtgGCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGTAACACTCGCCGATACTTGCGATGACTGCCGActcgaggcggaggcggcgctgcaggcggcgGCCGTGGCGCGGCTGGAGGCGCAggtggcgcggctgcgagcgcggCAGGACCACCAGGAGCGAGAGGCGCGGGAGGCGCTCAACCGAGTGGAAGAACTGGAGACGGAGAACAGCCACCTCACCAAGAGGCTCGACAAACTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
Protein Sequence
MAKRSEFATPENSDEESGGAFTDGDFDDIDDENIVEPKDYVNETVNTNITEPNSSVSSVEVQVDGLAMKINVNGADYEDLNNQSASEESGDFSRDSQSEGNTSIVGILGGQQKHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRSGGRLAALSPSVMHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHREKCSCYERLKREHASLEREVARARDAVRARDAAAAAAGRAFVEAAGAPDADAGEACGSVPPLALVSRASEQLLNDAGEGTLDVRLERLVSAKAALEGEVRKLKLQLNDERAARQNGVASHLDRDHDSELETLRKSVAEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDQHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRAWQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREVTLADTCDDCRLEAEAALQAAAVARLEAQVARLRARQDHQEREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-