Carc002401.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- Paxbp1
- Assembly
- GCA_036785405.1
- Location
- CM072057.1:2850241-2863257[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 9.2e-05 1 9.8 0.0 4 41 1355 1392 1352 1408 0.83 2 6 9.2e-05 1 9.8 0.0 4 41 1409 1446 1406 1462 0.83 3 6 9.6e-05 1.1 9.7 0.0 4 41 1463 1500 1460 1515 0.84 4 6 9.2e-05 1 9.8 0.0 4 41 1517 1554 1514 1570 0.83 5 6 9.6e-05 1 9.7 0.0 4 41 1571 1608 1568 1623 0.84 6 6 2.9e-17 3.1e-13 50.8 0.1 4 190 1625 1791 1622 1798 0.75
Sequence Information
- Coding Sequence
- ATGTCGCTGTTCCGAAAACCTAAAAAGATCCAGAGGCGTATGTTTTGTGCTGACGACGATGAGGACGGGGAGCCcgaggcgccgccgccgccgatcATCAGTCACAACAAGAAGGAGAACAAACCAGTTAAAAGCACCACACTTTTAAGTTTCGCAGATGAAGAGGAAGAAACAGAGGTGTTCAAAGTGAAGAAATCTACTCAAAGCAAGAGACTGAGTAAGCGCAGGGAGAAGGAGAAGCGCAAGCCACCAGATGGTGAAAGTAATAAATATGACAATCATAATGATGACGTCACTCTTgaCCAACCAGCGGAGAACAAAGACAAGGAGGAAGAAAAACCAACAACGCAAAAGAAGAAAATCACTCTGGAGGGGCTGATCCTATCGGGTCGGgaggcgctggcggcgggcgcgggggaCATGTCCGACAGCGGGGGTGAAGAAGGGGACGGAGAAGACGAGGAAGCGGATAATAGGGGGTTCCACAAGTACCGCGCGGAGTCGGTGCGCGCGGCGCTGGCCGTGGCCCACTCCGGGCACATTCCCGACGCCGCGCTCATCCACGCGGCGCGCAAGACGCGACAGAAGGCTCGCGAGCTAGGCGACTTCGTGCCGATACAGTCGGAGAACGCGGCCGGCTCGCGGCTGGTACGCGACGACGACATCGACGATGACGACGACGAGGACGGTAGGATACAGGTGCGGGGCTTGGAGCTGCCGAGCGATAAACCTAAACGTGGCACAGCGGCTGCCCTCTCCGACGAGGAAATCAACAGCGAAGCTGAAGAGTGGGAGGAGCAGCAGATGCAGAAGGCTATGCCCTCCATTGCTGATATCACAGGAAACGGCATCGAGCTGAACCCGTTCGCAgtggcgccgccgccgccgcagctggGCGACACGCCGGCGCACCTGCGCTCGCTGTCCGCGCCGGGgaagccgccgcccgccaccgcgcAGGAGCTCGTCGACGCGCTGCAGGAGAGGTTGATGGAGCTGCAGACGGACAGGCAGGCCACGATGAACAAGCGCGAGGCGTGCAAGGAGCggctgctggcggcggcgcgcacgcggGAGTCGCGCCGGGCGCGCTGCGGCGAGCTGGACGCGGCGTACCGGCGCGCGCAGGCGGCGCGCGGGTACATCACCGACCTCGTCGAGTGCCTGGACGAGAAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGGTACGTGCTCGATGTTCCGCCAGATGCCCGAGCTGGAGGCGCTGGAGGCgcgcgcgctggcgctgcaccgGCGCCGCTGCGAGTTCCTGGTGGAGCGGCGCCGCGCGGACGTGCGCGACCAGGCGCAGGACGTGCTCGCGCTGGCCGCCCGCGCCGGCGCAGCCAAACCGGTGGATTCGGAGGAGAAGAGACAACGCGCGGCGGAGCGGGAGGGTCGGAGGCGCGCGCGCCGGCTCAAGCGGGAGGCGGCCGGCACCGCGAGCGCGCACCGCGACGGCGACTCCAGCGACGACGAGCTGCCGCCCGCGCAGCTGCACCACGCGCAGCAGGAGACGGCGACGACGAGCTGCCGCCCGCGCAGCTGCACCACGCGCAGCAGGAGACGGGTGAGCGCGCGCCGACCCCGCACCCACAGCATTCGTGCGCGCCGGCTCAAGCGGGAGGCGGCCGGCACCGCGAGCGCGCACCGCGACGGCGACTCCAGCGACGACGAGCTGCCGCCCGCGCAGCTGCACCACGCGCAGCAGGAGACGGCGACGACGAGCTGCCGCCCGCGCAGCTGCACCACGCGCAGCAGGAGACGGGTGAGCGCGCGCCGACCCCGCACCCACAGCATTCGTGCGCGCCGGCTCAAGCGGGAGGCGGCCGGCACCGCGAGCGCGCACCGCGACGGCGACTCCAGCGACGACGAGCTGCCGCCCGCGCAGCTGCACCACGCGCAGCAGGAGACGGCGACGACGAGCTGCCGCCCGCGCAGCTGCACCACGCGCAGCAGGAGACGGGTGAGCGCGCGCCGACCCCGCACCCACAGCATTCGTGCGCGCCGGCTCAAGCGGGAGGCGGCCGGCACCGCGAGCGCGCACCGCGACGGCGACTCCAGCGACGACGAGCTGCCGCCCGCGCAGCTGCACCACGCGCAGCAGGAGACGGAAGCGATCCGCGCGTTGTCGGGCCGGCTCTTCTCCGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCTCGCCTGCGCCGCCGCCAGCCCGCGCTGTACAACGACGCGTACGTCGCCGAGTGCCTGCCGAAGCTCCTAGCGCCCTACGTGAGGCACCAGGTACGTGCGCCTCTGTTGTCCGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCTCGCCTGCGCCGCCGCCAGCCCGCGCTGTACAACGACGCGTACGTCGCCGAGTGCCTGCCGAAGCTCCTAGCGCCCTACGTGAGGCACCAGGTACGTGCGCCTCTGTTGTCCGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCTCGCCTGCGCCGCCGCCAGCCCGCGCTGTACAACGACGCGTACGTCGCCGAGTGCCTGCCGAAGCTCCTAGCGCCCTACGTGAGGCACCAGGTACGTGCGCCTCTGTTGTCCGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCTCGCCTGCGCCGCCGCCAGCCCGCGCTGTACAACGACGCGTACGTCGCCGAGTGCCTGCCGAAGCTCCTAGCGCCCTACGTGAGGCACCAGGTACGTGCGCCTCTGTTGTCCGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCTCGCCTGCGCCGCCGCCAGCCCGCGCTGTACAACGACGCGTACGTCGCCGAGTGCCTGCCGAAGCTCCTAGCGCCCTACGTGAGGCACCAGGTACGTGCGCCTCTGTTGTCCGACGCGCTGTCGGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCATGGCTCGCCTGCGCCGCCGCCAGCCCGCGCTGTACAACGACGCGTACGTCGCCGAGTGCCTGCCGAAGCTCCTAGCGCCCTACGTGAGGCACCAGtTGATATTATGGAATCCGCTGGCGGACGAAGACAACGAGGACTATGAGAAAATGGACTGGTACAAATGCCTCATGATGTACGGCGTGAGGTCCGAGCAGGTGGCGAGCGACTCGGACGCGTCGTCGTCGGGCTCGGAGGCGGCGCGTGTGGGCGGCGTGACGGAGGCGGCGGTGCGCGACGACCCGGACCTGCTGCTGGTGCCCACGATTATTGATAAGGTTGTGTTGCCGAAAGTTACTGAAATAGTGGAGCACGCGTGGGACCCGATGagcgtgcgcgcgtgcgtgcGGCTGCGGCAGCTGCTGGTGCGCGCGTGCGAGCTGCCCGTGAGCACGGCGCTGGCTCGCCTCGCGACCGCCGCCCGAGCCAGGCTCGCGCAGGCGCTCAACGCGGACGTGTTCCTGCCCGCCTTGCCTCCCCAGTGA
- Protein Sequence
- MSLFRKPKKIQRRMFCADDDEDGEPEAPPPPIISHNKKENKPVKSTTLLSFADEEEETEVFKVKKSTQSKRLSKRREKEKRKPPDGESNKYDNHNDDVTLDQPAENKDKEEEKPTTQKKKITLEGLILSGREALAAGAGDMSDSGGEEGDGEDEEADNRGFHKYRAESVRAALAVAHSGHIPDAALIHAARKTRQKARELGDFVPIQSENAAGSRLVRDDDIDDDDDEDGRIQVRGLELPSDKPKRGTAAALSDEEINSEAEEWEEQQMQKAMPSIADITGNGIELNPFAVAPPPPQLGDTPAHLRSLSAPGKPPPATAQELVDALQERLMELQTDRQATMNKREACKERLLAAARTRESRRARCGELDAAYRRAQAARGYITDLVECLDEKMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAGTCSMFRQMPELEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAARAGAAKPVDSEEKRQRAAEREGRRRARRLKREAAGTASAHRDGDSSDDELPPAQLHHAQQETATTSCRPRSCTTRSRRRVSARRPRTHSIRARRLKREAAGTASAHRDGDSSDDELPPAQLHHAQQETATTSCRPRSCTTRSRRRVSARRPRTHSIRARRLKREAAGTASAHRDGDSSDDELPPAQLHHAQQETATTSCRPRSCTTRSRRRVSARRPRTHSIRARRLKREAAGTASAHRDGDSSDDELPPAQLHHAQQETEAIRALSGRLFSDALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQVRAPLLSDALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQVRAPLLSDALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQVRAPLLSDALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQVRAPLLSDALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQVRAPLLSDALSAWRDVRGVCARMARLRRRQPALYNDAYVAECLPKLLAPYVRHQLILWNPLADEDNEDYEKMDWYKCLMMYGVRSEQVASDSDASSSGSEAARVGGVTEAAVRDDPDLLLVPTIIDKVVLPKVTEIVEHAWDPMSVRACVRLRQLLVRACELPVSTALARLATAARARLAQALNADVFLPALPPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -