Carc006425.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- JRK
- Assembly
- GCA_036785405.1
- Location
- CM072060.1:11539487-11541457[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-12 1.8e-09 38.0 0.1 2 39 16 53 15 55 0.96
Sequence Information
- Coding Sequence
- ATGGTACGAACTTACAAACGTAAAACAGATCGTGGAACATGGGAAGAAGACGATATGAGAAGAGCTGTTAGAGCTGTGCTTTCTGAGACAATGGGATTTCTTCGAGCCTCAGCTACATATAACGTACCTAAATCGACTTTGGAACGGCGAGTGAGAAAGGCTCGATGTGCAGATGACGATACCAATTCAGAGAACGACTatgggaaaaaaaaattaggacgctatgaaacagtttttaataaaaaacaagaagaagaattatCTCAGTACATTAAATCAATGGAAGCGCGCCTTTTTGGAATAACTGGTAAAGAGCTTCGGATTTTAGCTTTCCAGTTAGCTGAGCGAAATCATATTCAGAACCCATTTAACACAGAGACTGGAATGGCTGGAGAAGACTGGCTCAGTGGATTCCTAAAAAGGCATCCTGAACTTTCATTTAGACGTCCAGAGCCAACTTCTGCTGCAAGGGCTATGGCTTTTAATAAAGTGGCAgttaatgaatttttcacattattGGAAAGAGTTGTAGAAGAGCATGGCCTTACCGCTGACAGGATTTATAACGTCGACGAGACCGCTGTTAGTACTGTGCCAAAAAGTCAATCAAAGATATTGTCACTTAAGGGTCAGAAGCAAGTTGGCTGCATATCATCTGCAGAAAGGGGACAATTAGTTACAGCTGAAATCTGTTTTAACGCCGCCGGAAAATACGTACCACCAATGCTGATCTACGGCAGAAAACGAATGAAAAATGAGTTGCTGGATGATGCACCACCAGGATTTTGGGGGACATGTAGTGACAATGGATGGATAACTTCACAATTATTCTATGATTGgttcaaaaagtttgtagaaaCCGAAAAACCAACTAAAGAAAAACCAGTCTTGTTGCTACTGGACGGTCATGCATCCCATACAAAGAATATTGATTTAATAGATTACGCAAGGGAGCATCATGTAATACTACTGTGTACACCACCTCATTGTACACACAAATTACAGCCCTTAGATGTAGCATTCATGAGACCTCTGAGTACATATTATGGTTCAGAAGTGAAAAAGTGGCTAAGAGATCATCCCGGACGCGTAGTTACACCTTACCAAGTGGCAAAGCTATTTGGACAAGCATATTTACAAGCAGCTACGATGCTGACTGCTATGAACGGGTTTAGGAAATGTGGAATATGGCCACTTGACAGGAATGTATTTTCAGACGCTGACTTTATAGCGTCTGAAACAACAAACACTGAGACTTTGCCGTCTGAAAATATAAATCTTGAATCAACATCTCAGGTTCCAACAACTTCAACGTCAACTCCCATAGAGGGAACACAGCAAGAGATTGATATATCGGAAGTAACCCTAGATGAACCATACATTCCAGCACAAAAAGATACTTCTGCTGATCGTGCAATTACGGAATCAATTGTGAGCTCTGAGGTTTTACCACAGCCTTCGACTTCTGCACACTTAAATAAAGATATGACCCCTGAGAGACAAATCCAGCCAGCAAGTTCCTCGTTTTCCGTGACCCCAGAAAGTATTATAGCTATACCCAAGGAAGTAAGAACCAAAGAGAGAAAATTAAGAAGACGCGGTAAAACTGCAATACTTACAGCTTCTCCGTACAAGAATGATCTTATTaacgaaataaataaaagacaaaaagtaaataaaacgaCTGACAAAAAGGAAACTGACAATAAAAAGGCTCAAAAGCAAAAACCTGAGAAAAAGAAGGCGGAAAAAAAGAATATCACCAAAAGACGCAAAAAAGAAAGTGACACAGATTCATCTAGAGACGAAGAAAATGATTGTCCTTGTATATATTGTGGCTATTTATACTCAGAATCCACTGAAGGATGGGTTATTTGTAGCGTGTGCCATGGCTGGGCCCATAATTCCTGCGCAGGGGTCGACGAAGATGATGAAGATGCGCATATATGTGAGCTTTGCCAACCAGAATAA
- Protein Sequence
- MVRTYKRKTDRGTWEEDDMRRAVRAVLSETMGFLRASATYNVPKSTLERRVRKARCADDDTNSENDYGKKKLGRYETVFNKKQEEELSQYIKSMEARLFGITGKELRILAFQLAERNHIQNPFNTETGMAGEDWLSGFLKRHPELSFRRPEPTSAARAMAFNKVAVNEFFTLLERVVEEHGLTADRIYNVDETAVSTVPKSQSKILSLKGQKQVGCISSAERGQLVTAEICFNAAGKYVPPMLIYGRKRMKNELLDDAPPGFWGTCSDNGWITSQLFYDWFKKFVETEKPTKEKPVLLLLDGHASHTKNIDLIDYAREHHVILLCTPPHCTHKLQPLDVAFMRPLSTYYGSEVKKWLRDHPGRVVTPYQVAKLFGQAYLQAATMLTAMNGFRKCGIWPLDRNVFSDADFIASETTNTETLPSENINLESTSQVPTTSTSTPIEGTQQEIDISEVTLDEPYIPAQKDTSADRAITESIVSSEVLPQPSTSAHLNKDMTPERQIQPASSSFSVTPESIIAIPKEVRTKERKLRRRGKTAILTASPYKNDLINEINKRQKVNKTTDKKETDNKKAQKQKPEKKKAEKKNITKRRKKESDTDSSRDEENDCPCIYCGYLYSESTEGWVICSVCHGWAHNSCAGVDEDDEDAHICELCQPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01358811;
- 90% Identity
- iTF_00354007;
- 80% Identity
- -