Carc028084.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- Arid2
- Assembly
- GCA_036785405.1
- Location
- JAWDAA010000030.1:6821813-6873916[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.2e-07 0.001 20.5 0.0 2 52 585 639 584 644 0.88 2 7 2e-05 0.16 13.4 0.0 17 52 667 703 656 708 0.88 3 7 2e-05 0.16 13.4 0.0 17 52 731 767 720 772 0.88 4 7 2e-05 0.16 13.4 0.0 17 52 795 831 784 836 0.88 5 7 2e-05 0.16 13.4 0.0 17 52 859 895 848 900 0.88 6 7 2e-05 0.16 13.4 0.0 17 52 923 959 912 964 0.88 7 7 9.9e-09 8.2e-05 24.0 0.0 17 78 987 1051 976 1052 0.86
Sequence Information
- Coding Sequence
- ATGGCTAAATCACAAATAAATACTAAATCGAGGAACTATTCGCTAGATAAGGAGACGTTTCTAAAGGATTTGAAGCAATTTAACGAAAGTAAAAATATTCCGTACAAAATACCGGTAGTAAATGGGGTTGATATTgatttatacctattatattcgCTGGTGCAACAGCGTGGAGGTCTAAGCAGGgtgAACCAAAACGATACCTGGGAGTCATTTTTGCGTCAACTCAGACTACCACACCCTTGTATAAATGGATCTACCCTACTCAGAAGAATTTATGGTACTTATTTGGAAAAGTATGAAAGAGCCAAGGGGCCTCCACGCCTGGATCTGGATGACAATGACATGGATGAGGATCCCAGGAGAGGCAGGGGTGGTGGAATGCCAAGGATCACTTTCAGTGGCGGCTCTTACATATCAGCTTCAGGCGAGGCACTCCGTCCGGCCAACAGGGTCGCTGGCCCGTCGGAACGGTTGACGCTGTCCCTACTGTCTCCGATGCCCAACGAGCAGGATTTCGCAGTCAACGTGTGCACGGTTCTGGCTGCGGATCACTCCAACCGGCTGCCCCTGAGCACCACTCCGCATATATTGGACTTCCTACTCGCACATGCAGGGGTTTATAATCATTCGAGTCTCCGAGACACAATCGGTCGATCATACTACGAAGCCCGAGGCAGATATCCTCACGAGTTCTGGCAGCTGAGAGCTGGGGGCGGTGGTGCTAAGGAGCTAGCTGATGAGACCAAGTTCATGCAGCCCGGCCTGGAGCAGCCGGAGCTGATGGTGCAAGCCCTGGCCGCACACAACACCCTGACCGACTGCCTAATGCAGGGAGCGGAGGACGAAGACAGCTTGGACAAAATTATTGAAGAGGATCTGCTTGAAGACTGGGTGACAGAACCATCGGAGGAGGATCAGCTGTTCGCGCCGGAGCTGCCGGGCGGCGCGAGCTGCGTGTACACGCAGCGCGTGTTGCAGATCGCGTCCATCGTGCGCTCGCTGTCCTTCCACGAGGAGAACGTGCAGTATCTCGCCAGGAACACCACCCTCATAAGATTCTTATTACTATGTGCCAATTGTTGGGTTGGAGCACTCCGACAAAGTGGCTTGGACACGCTTGGAAACGTTTCCACAGAGCTAATTATAAAGGACCCAGCGACATGTCTGATATCCAGACACGTGATATCGACGATCCAAACAGCGCTCACGTCGCAGGACCGCGCGCGAGTCCTAGCGGCTTTGGAGCTGCTCAACAAGCTGGCGCAAAACGAGGTCAACGAAGACGCCTTGCTTAAAGCGCTGGAAGCCAAGGTGTATCGGGACGTATGCTCCCTGCTAACCCTACGCGATATCATGGTGCTAGTGTGCACGCTGGAGTGCGTGTACGCGCTGACGGGTTTGGGCGACCGTGCGTGCGAGGCCGTCGCCAGGGTGCCCGGGCTACTGCAGACGCTGGTTTCTCTTGTCACGGTCGAGGCGCAAAGCTACGGCCCTCGCGCGTGTATACTGATGCGCGTGGTAGAGACCGTCAGCGGCCCGCAAGCCGTCGCCGCGGCCGGCACAACGGAGCCGGTGTCCCATCCCACGCCGGTAGCGCAGCCACAACCGAGCACGCCAGTCAAGCCGGCTTCGGAACCGCCGCCGCTAACCTCGACGTCCAACACCACGCCAGCGAGCGTGCCTGTCTCTGCGCCCATGTCGACGCTGCAGCAGTCGCATATACAACAACGGACAGTACAGGAAAATGAGCACTTCGTGCAAGCGTGGCTGCGAGCCACGTACGAGCCGCTGCCGGCGAGCGACAACAGCACGTGCGACGCCGCCGACGTGTACCGCCAGTACCTCGCGTGCTGCACCAAGCTGTCGCGCAAGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGTGAGATATTATTCCGAGCCACGTACGAGCCGCTGCCGGCGAGCGACAACAGCACGTGCGACGCCGCCGACGTGTACCGCCAGTACCTCGCGTGCTGCACCAAGCTGTCGCGCAAGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGTGAGATATTATTCCGAGCCACGTACGAGCCGCTGCCGGCGAGCGACAACAGCACGTGCGACGCCGCCGACGTGTACCGCCAGTACCTCGCGTGCTGCACCAAGCTGTCGCGCAAGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGTGAGATATTATTCCGAGCCACGTACGAGCCGCTGCCGGCGAGCGACAACAGCACGTGCGACGCCGCCGACGTGTACCGCCAGTACCTCGCGTGCTGCACCAAGCTGTCGCGCAAGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGTGAGATATTATTCCGAGCCACGTACGAGCCGCTGCCGGCGAGCGACAACAGCACGTGCGACGCCGCCGACGTGTACCGCCAGTACCTCGCGTGCTGCACCAAGCTGTCGCGCAAGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGTGAGATATTATTCCGAGCCACGTACGAGCCGCTGCCGGCGAGCGACAACAGCACGTGCGACGCCGCCGACGTGTACCGCCAGTACCTCGCGTGCTGCACCAAGCTGTCGCGCAAGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGTGAGATATTATTCCGAGCCACGTACGAGCCGCTGCCGGCGAGCGACAACAGCACGTGCGACGCCGCCGACGTGTACCGCCAGTACCTCGCGTGCTGCACCAAGCTGTCGCGCAAGGGCGTCATTGCGCCCGCGCACTTCCCCAGACTTGTGCGGACTGTGTTTGGAGGCACCGTGGGACCAAACACTGTCAGCACGTCCAGCGGTGAGACGCAGCACGTGTACGTAGGTATACGCGCGAAAAACGCAGCCAACAGGACCAACCCACCTGCTGGACCCTCGTCGCCCATCCTGAAGGCGCAACTCACGAACAAGCCACCGACCAGCGAGCCCaaaccgccgccgccgcagcctcAGATAGTTCAGCAGGCGCCGCACCCGGTGCTGTCGCAGGCGCTGGAGTCGTCGCCGTCCAACACGTCGCTCATCAAGCACCTACTGGCGCACAAAGTAAGCCCCGCCCCGCCACCGCACGCGCAAgtCGCTCAAAGACAACAGAGTCAGCAGAGAGTGGGGCCAGCGCAGGCTGGAACCGTCGTGGTACAGGCTGGCCAATCAGCgGGTATGGAAGTGGACCCCGAGGCGTTGATTAAATGCACAACAATTATACCGGGCGGAGTTGCTACTAACCAAAACGCGCAAGGGGAAAAGAAAACGGCTCAAAACAAAATGCTGGCGGACctccttgaaaaaaaatccaacccTCCAGTGCAAGTCGTTCCAATGGGACAACAGATCAACGCGCCGACCATACAAATAACCGAGACCGGGCAAATAGTGCAGGTCAAATCCGAGAACCCTCTCATACAAATCAATACAGACAACGTCCAACCGAGCGGGCcgttcttccaaataaaaaacGACCAAGGCCAATTGGTGCAACTTAAAAACGACCAAGGCCAGATCATACAGTTGAAGAGCGACCAACTACAAGGATTGCTACAGTTTAAAAACGATCAAGGCCAAATAGTGCAGATCAAAAACGAACAGTTGGTCCCTCAAGTAGTTCAGCAGAGTGTCATACAGAGCGTGAAGACGGAAAAGGATCAGATAATCGATACCGTGGTCACCGATCACTCGTATACGGAACCGCCTAACAAAAAGGCGAAGATTGAGGATAAGTCTGAGAGCAATTCTCCTCAAGAGAGAGAGAGCGTGTCAAAAACCGCTGCCAACCTGTACGCTGCGATTGCGGCGTCCGCGCTAGAAGACGAAGACGATTTGGTGCAACCACCGCCATTGCAAGTGACACAGCCGACGATGCAAGTGCATCAGCCGACAATGCAAGTGCAGCAACCAGCTCTGCAAATGCACCAGACTCCGACTTTACAGGTCCAACAGCCAACGTTGCAGGTCCAACAGCCAACATTGCAGGTCCAGCAGCCGATGCTACAGGTGCAGCCGATGGACGTGCAGAATATCATCGCTTCACAATCCGGACAAATTATATTACAAGaaaagCAGATGCCGTCTCAAGCGACGCAGTTCATGCAACAGCCGATGCAAATTATAGCTACTCCTGGCTCCTCACAAGGAGGTCTTAGCTATATAGCTCAAAATATCCCCGGCAATATGATGCAGAAAACAATCATTATCGTACAAGGTGCCGGCGGGGGACCGCTCACATTGACGGTATGTTACGACAAGTAG
- Protein Sequence
- MAKSQINTKSRNYSLDKETFLKDLKQFNESKNIPYKIPVVNGVDIDLYLLYSLVQQRGGLSRVNQNDTWESFLRQLRLPHPCINGSTLLRRIYGTYLEKYERAKGPPRLDLDDNDMDEDPRRGRGGGMPRITFSGGSYISASGEALRPANRVAGPSERLTLSLLSPMPNEQDFAVNVCTVLAADHSNRLPLSTTPHILDFLLAHAGVYNHSSLRDTIGRSYYEARGRYPHEFWQLRAGGGGAKELADETKFMQPGLEQPELMVQALAAHNTLTDCLMQGAEDEDSLDKIIEEDLLEDWVTEPSEEDQLFAPELPGGASCVYTQRVLQIASIVRSLSFHEENVQYLARNTTLIRFLLLCANCWVGALRQSGLDTLGNVSTELIIKDPATCLISRHVISTIQTALTSQDRARVLAALELLNKLAQNEVNEDALLKALEAKVYRDVCSLLTLRDIMVLVCTLECVYALTGLGDRACEAVARVPGLLQTLVSLVTVEAQSYGPRACILMRVVETVSGPQAVAAAGTTEPVSHPTPVAQPQPSTPVKPASEPPPLTSTSNTTPASVPVSAPMSTLQQSHIQQRTVQENEHFVQAWLRATYEPLPASDNSTCDAADVYRQYLACCTKLSRKGVIAPAHFPRLVRASLRPRTSPDLCGEILFRATYEPLPASDNSTCDAADVYRQYLACCTKLSRKGVIAPAHFPRLVRASLRPRTSPDLCGEILFRATYEPLPASDNSTCDAADVYRQYLACCTKLSRKGVIAPAHFPRLVRASLRPRTSPDLCGEILFRATYEPLPASDNSTCDAADVYRQYLACCTKLSRKGVIAPAHFPRLVRASLRPRTSPDLCGEILFRATYEPLPASDNSTCDAADVYRQYLACCTKLSRKGVIAPAHFPRLVRASLRPRTSPDLCGEILFRATYEPLPASDNSTCDAADVYRQYLACCTKLSRKGVIAPAHFPRLVRASLRPRTSPDLCGEILFRATYEPLPASDNSTCDAADVYRQYLACCTKLSRKGVIAPAHFPRLVRTVFGGTVGPNTVSTSSGETQHVYVGIRAKNAANRTNPPAGPSSPILKAQLTNKPPTSEPKPPPPQPQIVQQAPHPVLSQALESSPSNTSLIKHLLAHKVSPAPPPHAQVAQRQQSQQRVGPAQAGTVVVQAGQSAGMEVDPEALIKCTTIIPGGVATNQNAQGEKKTAQNKMLADLLEKKSNPPVQVVPMGQQINAPTIQITETGQIVQVKSENPLIQINTDNVQPSGPFFQIKNDQGQLVQLKNDQGQIIQLKSDQLQGLLQFKNDQGQIVQIKNEQLVPQVVQQSVIQSVKTEKDQIIDTVVTDHSYTEPPNKKAKIEDKSESNSPQERESVSKTAANLYAAIAASALEDEDDLVQPPPLQVTQPTMQVHQPTMQVQQPALQMHQTPTLQVQQPTLQVQQPTLQVQQPMLQVQPMDVQNIIASQSGQIILQEKQMPSQATQFMQQPMQIIATPGSSQGGLSYIAQNIPGNMMQKTIIIVQGAGGGPLTLTVCYDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00352822;
- 90% Identity
- iTF_00352822;
- 80% Identity
- iTF_00352822;