Cpil026808.2
Basic Information
- Insect
- Coelopa pilipes
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947389925.1
- Location
- OX376698.1:11762885-11768074[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.7e-14 4.1e-10 40.2 8.9 1 41 306 346 306 347 0.96 2 3 1.2e-69 1.8e-65 222.0 23.9 90 299 346 542 344 543 0.93 3 3 0.56 8.8e+03 -3.6 5.6 8 36 576 606 550 617 0.49
Sequence Information
- Coding Sequence
- ATGAGTCGCAGTGCATTGATTGGGCGCAGGAGACCGAGTATGCGGACAAACGCCGAGGACAAGGCCCTGGATCTGATAGCCAGAGAGGTAACCGAGGCGCGAGAGGTCGAGGAGTGGGGGCTCTGGAGCTGGAACTGGCAGTGGGCAGATGTGCAGCATAACAGGAATAACAAACAGACACAGATGTCGGCACACTGGGGCCCCTCCTTGAGCGATTGTCTGGAGATGCATTCGAGTTTGGTGCAGGGTGTCGCGGATAAAGGAACATGGAAAATTGTAAGTGACAATCGGCAGCAGCCAACCGCGAGACTCTGGGCTTACGTCGAGGACAAAATGTCAGAGGAGATCGCGAAGCAGACGGCGGAGACCAACAACATTAGGCTTGACAAAACGCCGGCCCACGAAGGATCGGAGTCCCGAGCCAGCGATTATGACGAAATCGGCGAGGAATTCGACTTTAGAGACAGTGATTTGGACTGCGATACCGTCAAAGCCACCGCCAATGTCAAAGGCGGTCGAACTCCGAGTAATAATAACGTCCGGTTGACGGAAGACACAGCTCCGAAGCCGCCAACCAAGACCGTTGTCATACAGCCTGCAACTGCAGCCACAACAAGCCAACAACAACAGGGCGCATTCTTGTCTGCAACAGCGAACGCCAGTGGCCAGAATTCGACAGGGGAACTTCTCGAGAAAACCGTCAACTCGCAGTCGGTAGACGATGACGTAATTGTGGAAAGCGATAGCAAAACAGAGACGAAAATCATCGAGCTCACTTGTTGCgacagtcaaaatgcggagggacacgacgtagacgccaacgacgatgatgacgacgatggcgactactacagcgacgacccggagccggatgatgagttgatcgtccagttcttgggcgaagcAAATCGAATCGCTGAGGCCAGACTGACTGCCAGGAGACAAGCTCGCGCTGAGGCCCGCGAGATACGCCTGCTCGAGCTGGAGCGCCAACAGAACGACAAGGAGCACCATGCAAGTGGAATGTTCGAAATGTCCGAGCTCAAGGAAGCCGAAGAACGATTCCGAAAGGCGATGATCGCCAATGCTCAGCTGGACAACGAGAGGGCATCCAAGAACTATCAAATCCAGCACCTGAAGGATGAACTCGAGGAGATCGGAGAAGCCCACGCCCAGGTACTGCGCGAGCTGAAGGAAAAGACACACGATTGCAGCACGCTGAAGAGGAACCTCGAAAATCTGAACGAGGAGCTGAAGTTGGTGCATGGACAACTGCAGGAGCGAGACGCCCTCATAGTGGAGCACGGTCTGGTGATCATTGCCGTGGAGAACAACGACGGCACGGACGCCAAGCGCACTCTCATTTCCACCGAGAATGCCCAACTTCTAAGCTCTGTGCAGGGCTCCCTAGACGTCCGACTTAAGCGATTCAACGAAGAGAAGCAACAACTACGGGCGGAGATACAACTACTGAGGGACCAATTGGATCACTACAAAACGAAAGACAAGGAACGACTCAACCACCATGCGACCGAATCCGATGACGAGTTCGAGACCCAACGAGAAGCCAACAAAATCATTTCGGATTACAAATTCCGGTTGCAGAAGGCTGAGCAGGATATCGCTGCACTCCAAGCCAATTTGGCCAGGTCGGAGACTCAGTTGTTGCGATACAAGAGCGCGGCAGAGGCCGCCGAAAAAGCCGAGTCCGAGCTCAAGGGTGAACGTCGGAAGCTGCAGCGCGAAAATCGAGAAGCCATTGATCGTTTGGAAGAACTGGAGACAGAAAACAAACATCTACTGAAGAGACTGGATAAACTAAAGAATGCCAAGAGTGCGCTACTTAAGGAGCTATAA
- Protein Sequence
- MSRSALIGRRRPSMRTNAEDKALDLIAREVTEAREVEEWGLWSWNWQWADVQHNRNNKQTQMSAHWGPSLSDCLEMHSSLVQGVADKGTWKIVSDNRQQPTARLWAYVEDKMSEEIAKQTAETNNIRLDKTPAHEGSESRASDYDEIGEEFDFRDSDLDCDTVKATANVKGGRTPSNNNVRLTEDTAPKPPTKTVVIQPATAATTSQQQQGAFLSATANASGQNSTGELLEKTVNSQSVDDDVIVESDSKTETKIIELTCCDSQNAEGHDVDANDDDDDDGDYYSDDPEPDDELIVQFLGEANRIAEARLTARRQARAEAREIRLLELERQQNDKEHHASGMFEMSELKEAEERFRKAMIANAQLDNERASKNYQIQHLKDELEEIGEAHAQVLRELKEKTHDCSTLKRNLENLNEELKLVHGQLQERDALIVEHGLVIIAVENNDGTDAKRTLISTENAQLLSSVQGSLDVRLKRFNEEKQQLRAEIQLLRDQLDHYKTKDKERLNHHATESDDEFETQREANKIISDYKFRLQKAEQDIAALQANLARSETQLLRYKSAAEAAEKAESELKGERRKLQRENREAIDRLEELETENKHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -