Cfri015371.1
Basic Information
- Insect
- Coelopa frigida
- Gene Symbol
- lrrfip2
- Assembly
- GCA_017309665.1
- Location
- CM029562.1:4875145-4878698[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.23 2.4e+03 -2.3 1.0 57 74 168 185 127 207 0.51 2 3 5.2e-12 5.5e-08 32.7 12.4 1 33 233 265 233 272 0.94 3 3 8.4e-72 8.9e-68 229.0 23.1 90 299 274 470 268 471 0.93
Sequence Information
- Coding Sequence
- ATGTCTGAGGAGATCGTTAAGCAGACCGTTGTCGGCCGGACGCGGGAGACCAACAACAATAACAACAACAACAGGACCGACAAAGTCCCGACCCTCGGAGCATCGGAATCGCGTTCCAGTGACTATGATGAAATCGGCGAAGAATTCGATTTCAGCGATAGTGATTTGGATGAATTCGAAGAGTGCGATAATGCGAATAGTGCCAAAGACAATCGAGCTACCGGTGATGATAACAACGTCCGGTTAACGGAAGGCGCAGCCGAGGAGACACCAACAAACACCATCACACCGACAGCCACCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGACAACAAAAGCAACAGCAGATCGAACGAAGTCGAACCTGCCGGAGACAAAACCGTCATCGTCACCGTCGTCAACTCTTCTCAATCGTTAGACGATGACGTAATTGTGGAAAACGATAGCAAAACAGAAACGAAAAACGTTGAAAATACACGTTTGGAGAGCGAAAAGGCGGATGGAGAGAGTCGAAAGGCGAACGACGAGAGTCAAAAGGCGGACGGACACGAAGCAAACGCCGACACGCACAACGACGATGAAGACGAAGACGATGGCGATTACTACAGCGACGATCCGGAGCCGGAAGATGAGTTGATCGTCCAGTTTTTGGGAGAAGCAAATCGAATAGCTGAGGCCAGGCTGAGTGCGAGGAGACAAGCTCGTGCTGAAGCCCGGGAAATACGACTGCTCGAGCTGGAGCGACAACAGAATGCTCAGGAACACCGAACAGCAGGTGGAGTCTTGGAAATGTCCGAACTTAAGGATGCCGAAGAACGTTTCCGCAAGGCGATGATCGCCAATGCTCAGCTGGACAACGAGCGAGCGTCGCAGAATTATCAAATCCAACATCTAAAGGATCAACTCGAAGAAATCGGCGAGACTCACTCCCAAGTTTTACGCGAACTGAAAGAAAAGACACACGATTGTAGTGCGTTGAAAAGGAATCTGGACAAATTGAGTGAGGAGTTGAAATTGGTGCAGGGACAATTGCAGGAAAGAGATGCGCTTATCGCCGATCACGGCTTGGTGATCGTTGCGATCGAGAATACCGATGGCACGGACGCCAAGCGCACGCTCATCTCGACCGAGAATGCACAGCTTCTGAGTTCTGTACAGGGATCTTTAGACGTTCGACTCAAGAGATTCAACGAGGAGAAACAACAACTGCGAGCCGAGATTCAGCTACTAAGGGATCAATTGGATCACTACAAGACGAAGGACAAGGAACGTCTTAGCCAAAACTCCTCCGAAACCGACGATGAGTTCGAGGCTCAACGAGAAGCCAATAAAATCATTTCGGATTATAAATTTCGTTTACAAAAGGCTGAGCAGGATATCGCTGTACTTCAAGCGAATTTGGCTCGATCAGAGACACAATTGTTGCGATACAAAACCGCTGCAGAGGCTGCAGAAAAAGCCGAATCCGATCTGAAGAGTGAACGACGGAAGTTGCAGCGAGAGGATTTGTTAGTCATTCACTTTTGGGATGAATGTCATTGTCAGTAA
- Protein Sequence
- MSEEIVKQTVVGRTRETNNNNNNNRTDKVPTLGASESRSSDYDEIGEEFDFSDSDLDEFEECDNANSAKDNRATGDDNNVRLTEGAAEETPTNTITPTATDXXXXXXXXXXXXXXXXXDNKSNSRSNEVEPAGDKTVIVTVVNSSQSLDDDVIVENDSKTETKNVENTRLESEKADGESRKANDESQKADGHEANADTHNDDEDEDDGDYYSDDPEPEDELIVQFLGEANRIAEARLSARRQARAEAREIRLLELERQQNAQEHRTAGGVLEMSELKDAEERFRKAMIANAQLDNERASQNYQIQHLKDQLEEIGETHSQVLRELKEKTHDCSALKRNLDKLSEELKLVQGQLQERDALIADHGLVIVAIENTDGTDAKRTLISTENAQLLSSVQGSLDVRLKRFNEEKQQLRAEIQLLRDQLDHYKTKDKERLSQNSSETDDEFEAQREANKIISDYKFRLQKAEQDIAVLQANLARSETQLLRYKTAAEAAEKAESDLKSERRKLQREDLLVIHFWDECHCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -