Chom013513.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- nfxl1
- Assembly
- GCA_004302925.1
- Location
- PYHX01000350.1:2177985-2181814[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2 1.7e+04 -8.1 6.4 15 19 157 161 156 161 0.82 2 21 0.13 1.1e+03 -0.3 0.4 4 10 192 198 191 198 0.95 3 21 1.8e-08 0.00015 21.6 16.0 1 18 206 222 206 223 0.98 4 21 1.5 1.3e+04 -3.7 2.6 6 10 249 253 248 253 0.89 5 21 5.1e-05 0.43 10.6 15.3 1 19 259 278 259 278 0.91 6 21 1.1 9.5e+03 -3.3 0.9 6 10 303 307 302 307 0.86 7 21 1.4e-09 1.2e-05 25.2 13.3 1 19 313 331 313 331 0.99 8 21 0.9 7.6e+03 -3.0 0.5 1 7 356 361 355 363 0.49 9 21 8.7e-09 7.4e-05 22.6 10.9 1 18 366 383 366 384 0.96 10 21 0.31 2.6e+03 -1.5 0.4 1 5 393 397 393 402 0.75 11 21 2 1.7e+04 -5.0 2.3 5 10 407 412 407 412 0.91 12 21 0.00015 1.3 9.1 16.5 1 18 418 435 418 436 0.98 13 21 2.8e-08 0.00024 21.0 13.4 1 19 445 463 445 463 0.98 14 21 0.12 9.8e+02 -0.2 10.6 9 18 508 517 499 518 0.87 15 21 0.0024 20 5.2 5.9 1 11 530 539 530 540 0.95 16 21 0.33 2.8e+03 -1.6 0.9 6 10 599 603 598 603 0.90 17 21 3.5e-06 0.03 14.3 5.1 1 11 609 619 609 620 0.96 18 21 2 1.7e+04 -5.2 1.9 15 18 633 636 633 637 0.83 19 21 0.00056 4.8 7.2 13.3 4 18 650 664 648 665 0.93 20 21 2 1.7e+04 -6.8 3.1 10 13 672 675 671 675 0.68 21 21 2.8e-07 0.0024 17.8 13.3 1 18 716 735 716 736 0.91
Sequence Information
- Coding Sequence
- ATGCCACCAACCAAGAATAAACAACAGAATTCTACTAAAAATCCATcccaaaaatttaatgaaactcATGCAAGAAACATTGAAGTCGCCAAAAAGTTAGTGGAAAATTATGTTTCATCTTCAGAAGATGAAGACGAATTGGatgagaaaacaattttaaAATCTATATACCAGCATTATGGTACTCGCAAGGAAGATGAACATCTATTGGCAAAAACAGCCGGCTTTTTGGAGAATGTTTTGCAAAGTGGAGCGGCTACATGTCTTATTTGTATTGGGAGCATAAAAAGATCAAATGCTATATGGTCgtgtaaattttgttattgtttctttcATTTGAATTGTATAAGGAGATGGTCCACTGATAGTATGGCTCAGGCGAAAGCCCAAACACAAAATGAACAAGGTTATTACAATCATATGGGAGAATATGTGCCTCCCAAAAAACCCAAAGCTCTACATTGGTGTTGTCCGCAATGTAGGCGCGAATTTCAGCCTGAGGAAAAACCAACAGAATATGAGTGTTTTTGCGGCAAAGAAATAAATCCACCCTCTCAACCTTGGTTAGTTCCACATTCTTGCGGTGAAATATGTGGTAAAACATTACAGCCTAATTGTGGCCACAAATGTACATTACTATGTCATCCTGGACCATGTCCACCTTGTGCTCAATACGCTTTTACATCATGTAAGTGTGGCAAATCTCCAGCAAAAACAGTTCGTTGTGCCGAAAAGTCATGGGAATGTCAACAAAAATGTGATTTGTTACTGCCTTGCAAACAGcatgtttgtaaaaaaatatgtcaCAAACCTGGTCAGTGTCCTCCCTGCCAACAAACAAGTATGCAAACCTGTGAATGTGGTCGAGAAACGGCAAAACGTCAATGTTGTGATTTGAAATGGCATTGTAAAAAACCCTGTGGGAAAAAGTATTCATGCGGTTTACATacttgtaaaaaaatttgtcattctgGTGATTGCGGAGAATGTCCCTTAAGCTTGCCACGTTCTTGTCCGTGTGGTAAAACAAAAAAAGTAGGACCTTGTACGGAAGTGATTGATACTTGTGGTGATACCTgtcaaaaattgttaacatgtGGAATACATACTTGTACGCAACGCTGTCATAAAGGCAATTGTAATTTGtgtttaattattacaaaaaagaaatgtcGATGTGGAATGCATGAAAAAGAATTGCCGTGTTCTAAGGAATTCACTTGTGAAaccaaatgtaaacaaattcgTGATTGTGGCAAACATCCGTGTAATCGTAagTGCTGTGATCGCAACTGTCCACCTTGCGATAAAGTGTGTGGTAAACCATTGTCATGTGGAAAACATAAATGCCAATCGATTTGTCACAAGGAACCTTGTTATCCGTGTCaacaaaaatctcaaattaatTGTCGTTGTGGTAAAACGAAAAGAACTGTGCCTTGTGGGCGAGAGCGTACGGCACGTGTAGTATGTTTGGAACCTTGTcgTATACCTTCAAAATGCCATCATGAAAATAAACATCGTTGTCATAAAAATGAGTGTCCACCTTGTAACCAACCTTGTGGTTTACCAAATGATACTACTAAGTGTGGCCATAAGTGTTTGGCTAGATGTCATGCTTCGGTTAAGGTAGCTAAGAAATCAAATCCCGATACTACAAACGTTTGGGAGCCCACGAAACAGTTTGAATTTAAACAATTGCCTCACCCTCAATGTGAGCAAAAGGTTAGTGTTACTTGTATAGGAGGCCATGAAGTAGCAGAATGGCCCTGTTGGAATTCAAAACCTTCATCCTGTCAACGTTTATGTAATCGTGTCTTACGCTGTGGTAATCACAAATGTTCCCTTGTCTGTCATGCTGTACCCGATATAAGAGATATGCAGGAACAAACTGGTTGTACACCTTGTGAAGAGGGTTGTCAAATTCCCAGGCCCGAAGGTTGTGTCCATAACTGTCCTAGACTCTGTCATCAACCTCCTTGCTATCCTTGCAATGTTGTTATCAAAACCAAATGCCATTGTGGACTAATGTATATTGTCTATAAGTGCAGCGAATATTTCAATAAAGATGGCAATGAAGGAGAAATTTTAGAACGacaagaaaacttaaaaagctGTGGAAATAGATGTTTAAAGAATtaCCCTTGTGGGCATCGTTGCACTTCAAAATGCCATTCTGGGCCATGTCCATATCCTGAATCTTGTCGTAAGAAAGTGCGCATTTATTGTGATTGTAAACGTATCAAATCGGAAATTGCGTGCGACAAACATCGTGCTGGGATGACAAAATTGTTGTGCGatgaaaattgtattgaaacacaaaatattgttaaacaaGCTCgccaaaaagaagaagaattacGACGTAAAGAGGAAGAAGAACGTAATCGTATGGAAGTAGaacaatttgaaaagaaatttattaaacgtAAACCAAAAGAACGAAAGACTTTAGAAGTGAAACAGAAAAATcctataaattggaaaattatagGAGTATATGCGGGTATTTTAGTAGCTGTATTGTTAGCTGTAGCTTTAGCATTTTATGAAGATCATTAA
- Protein Sequence
- MPPTKNKQQNSTKNPSQKFNETHARNIEVAKKLVENYVSSSEDEDELDEKTILKSIYQHYGTRKEDEHLLAKTAGFLENVLQSGAATCLICIGSIKRSNAIWSCKFCYCFFHLNCIRRWSTDSMAQAKAQTQNEQGYYNHMGEYVPPKKPKALHWCCPQCRREFQPEEKPTEYECFCGKEINPPSQPWLVPHSCGEICGKTLQPNCGHKCTLLCHPGPCPPCAQYAFTSCKCGKSPAKTVRCAEKSWECQQKCDLLLPCKQHVCKKICHKPGQCPPCQQTSMQTCECGRETAKRQCCDLKWHCKKPCGKKYSCGLHTCKKICHSGDCGECPLSLPRSCPCGKTKKVGPCTEVIDTCGDTCQKLLTCGIHTCTQRCHKGNCNLCLIITKKKCRCGMHEKELPCSKEFTCETKCKQIRDCGKHPCNRKCCDRNCPPCDKVCGKPLSCGKHKCQSICHKEPCYPCQQKSQINCRCGKTKRTVPCGRERTARVVCLEPCRIPSKCHHENKHRCHKNECPPCNQPCGLPNDTTKCGHKCLARCHASVKVAKKSNPDTTNVWEPTKQFEFKQLPHPQCEQKVSVTCIGGHEVAEWPCWNSKPSSCQRLCNRVLRCGNHKCSLVCHAVPDIRDMQEQTGCTPCEEGCQIPRPEGCVHNCPRLCHQPPCYPCNVVIKTKCHCGLMYIVYKCSEYFNKDGNEGEILERQENLKSCGNRCLKNYPCGHRCTSKCHSGPCPYPESCRKKVRIYCDCKRIKSEIACDKHRAGMTKLLCDENCIETQNIVKQARQKEEELRRKEEEERNRMEVEQFEKKFIKRKPKERKTLEVKQKNPINWKIIGVYAGILVAVLLAVALAFYEDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399151;
- 90% Identity
- -
- 80% Identity
- -