Chom008012.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01002258.1:1084286-1085127[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00017 0.72 10.0 0.1 22 44 29 51 23 56 0.90 2 4 0.0051 22 5.2 0.0 26 45 60 79 52 85 0.85 3 4 0.00041 1.7 8.7 0.1 22 46 85 109 82 114 0.87 4 4 0.066 2.8e+02 1.6 0.2 26 48 117 139 111 141 0.86
Sequence Information
- Coding Sequence
- atgaattttgtattaatacaCTATGGTCCAAAAATTTCGAAAACCTCTTTCCAAAAACACTACGACGAACATCAAGGTATTGTTGAACCACCCGCCCAATGTACCATCTGTGGGGCATGGTTAAAGAATCAACATAGTCTACGGGTGCATCATCAAACTCATGAAGATACACAGTTTGCCTGTGACATCTGTGGTAAATTCTTTAAGACCAAAAAGAATTTGAGTCGACACAAAGGCTATTGGCATCGGCGGGAACGTAATTTATCGTGTAGCTATTGTGACAAAGTATTTCGTGAAAAACGTAATCTTGATGAACATATGGCCATGCATACAGATACAAATCTATATACTTGTCCTCATTGTGGCAAAGAATCACGATCAAAATCAAATATGTATGTTCATATAAAAAGACAACATCCTGATGAATGGTGGAAATCAAAACAGGATCGTTATAAACTAAAACCTGAAGAAGGAAGTTCTGTCGCCACAACTGTTGTAGGAGATggggaaacaaaatttaaaacggCTGAATTGGGTTCAGTAACAGCTACTCAGGTTCTTTCGAATCTTACACAAGAATGTGTAAATACcgagtaa
- Protein Sequence
- MNFVLIHYGPKISKTSFQKHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQDRYKLKPEEGSSVATTVVGDGETKFKTAELGSVTATQVLSNLTQECVNTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01138402;
- 90% Identity
- iTF_00350536;
- 80% Identity
- iTF_00350536;