Chom010603.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01002334.1:433897-438963[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00014 0.0072 16.7 0.7 1 23 198 220 198 220 0.95 2 14 0.046 2.4 8.7 1.2 3 23 228 248 226 248 0.95 3 14 0.00015 0.0077 16.6 0.3 1 23 426 448 426 448 0.98 4 14 0.0012 0.064 13.7 0.3 1 23 454 476 454 476 0.99 5 14 0.001 0.054 13.9 4.6 1 21 508 528 508 530 0.93 6 14 0.012 0.61 10.6 0.3 1 23 549 571 549 571 0.94 7 14 0.0025 0.13 12.7 0.7 1 23 577 600 577 600 0.97 8 14 0.37 19 5.9 0.4 5 19 611 625 608 626 0.91 9 14 0.00022 0.012 16.0 5.6 1 23 635 657 635 657 0.97 10 14 5.1 2.7e+02 2.3 0.1 8 23 680 695 679 695 0.95 11 14 0.0066 0.34 11.4 0.2 3 23 703 723 701 723 0.97 12 14 7.9e-05 0.0041 17.4 0.5 1 23 729 751 729 752 0.95 13 14 0.0023 0.12 12.8 0.0 1 23 762 784 762 784 0.97 14 14 0.019 0.99 9.9 0.0 1 20 1393 1412 1393 1415 0.93
Sequence Information
- Coding Sequence
- ATGGATAATCATGGATATGGTGGCATACAGTGGATACAACACCACTCAAGTAATCACTCCTCCCATACTGGAGATATGAAAACTGCAGGTCAGTTAATAATAGATCCTCAACCGCCGCGTGAAGAGGATCTTATGGCTAGTGCAAATTCTTCATCGGATTTTATGACCACAGACAATGAAACCGACTCGGCGACAATTGCTCAAATTGCAGcagaaaatcttatttttatggCTCGTGATGGTCAAATGGTTAcggaaattataacaaataccaCTACCGATACAAATGGAACTGTGGTTGTGACCGCCAGTGATGGTGAACAAATTGACTGCGATACGATTATAGAACAAGCTGCCTTAATACAACAACATGAAGATGCTGGCGGTGGAGTTTATAGTGTGGATCATTTTGTCGAGAATACACCACAAATGGTCACCGAGGAGGTAATCACTGATGATTGGGTACAGCATCAGGGTGAAGAGAGAGTTGAAATACCTGCCGAACAAATTATAGGATCCAGTTCGCAAGTGCTTTTGGATATTGAAGTACCACTGCCAACTGTACAAGATGAATACACTGCCCTTAGGCCTTATCCCTGTGATTTTTGTAGTAGACGTTTTCGTAAAAAAGCTAGTTTAATGAATCATATGGTTGCTCATCAAACTGATAGAccacatttatgtaaattatgtgGTGCCCGATTTTTAAGAAGACAAGAtcttataaatcatttaaaaggaCATGCGGAAGAGCCAACAGAACCGCAAATGGATGATAGTGATTTCATACATTTTGTCACCGATACAACGAATTCACCACAACGTACCTCTAATGATCATTATTATGAACAGGATTGGAGTGTACCCGAAGATTCAGTAACAATACCAACAAAATCTAGTCgtaaacatcaacaacaattgcaacataTTACCTCCATTTCTAATCAACaaattattatggaaaatagcataacaacaacatcaacaacatcctctggaaatattttaacatcaaCACATACTACAACAGTACCTCCCAGAGGTCGCATAAGTCGTTTAAAACCAAAAGAAGATACTTCATATGTAGTAGAAGTTGCTAATAGTTGTCCTTCTGGCGAAATGATTATTTCATCAGCTTATAGTATTGTAGAATGTGATACATTATCTGCCAATACAGCAGCTGTTAAACTTTCTCAGGATAATAATTCACCCGCTTTAACTGAAAATGTTGATCAAAATGTTTTGCATTATCCCATAATTGATGATAGCAAACCATTTGTGTGTCAGCAATGTGGTCTGGCATTTTCGCGAGAGAAAGCCATGTTAGCACATACTAAGacCCATCGTAATGATTCACCCTATGAGTGTCCTCAATGTAATGAATTATTTTGGGATCAAAATAGTTTACAAGACCATCAAAAAACTCATCAATTTGAGGAAAGTAATTCTGAATATGATCCCAATGAAGGCGAAGACGAAACTCAAACAGAATCCGAGTCCGAACAACAATTATATGGTGAATTTTATTGCAGTGAATGTGGCATGTCCTTTCATCGCCAGGACTTGTTGAGAAGACATGCCAAATGTCATAACAAAGGTAATGGCATAAATACGGGTGAAACTAATGTGGAAAGTAAAGGTCAACATTGTTGTAATACTTGTGGTGAAACATTTGCCGAAGCTTTAGATCTACTAGCGCATGCAGAAATTCATGCACGTTACCCGCCTTTTAAgTGTGTCTTATGTGGTGAatcattttttgaagaatccaccattaaaaaacatttacaatccCAGCATCCTAATGAAATAACTGAAAACTCTTGTATTCTCTGTGGTAAAGAGTGTCGAGATCGAAAAGCTTTAATGAAACATGCCTGGGATCATTCAAGAGAAAAATGTCACTCTTGTTCGAAAtgtggaaaaaattttcataataaagcTCGTCTAAAACGACATATGGCCTCACATCGTGATAAATCCGTTCAATGTGATTGCTACATCGGCTGGCAAATTATTTCCTTGTCTGGAATGTGGAAAACATTTGGCTCCCGTAGTTCCCAACAAATTCATGTGCGCATTCATACGGGCGAAAGGCCATATGGTTGCAGATTCTGTTGGAAAGCATTTGCAGATGGTGGTACATTAAGAAAACATGAACGCATTCATACGGGAGAAAAACCTTATGCTTGTTCTGTATGTCCACGTGCCTTTAATCAACGTGTTGTATTAAGAGAGCATATACGTTCACATCATTCGGGTTTGGATGCCAAAAGAGGTACCTATTATTGTACAGTTTGTGGTGCTGAACTATCATCTTCAGGAGATTTAATACAACATTTAATACAGCACAGTGATATGAATACGGCTATGCAGAGGCAGCCGGTGactGGTCCACGAAAATATAAACGGCGACGTAAATTGAAACCTCATGAATTGGCAAGACTACAACATGATGTTAAGAATAATGGAGGAACCGGAAGTGATTTAGatttatccgattttgataTCGATAATGTCGATGATTTATTAGCAATGACAACAGACAGCAATACTGCCGCTGATGCAGTAACAAATGTTCAAGATTCTCAAAACAACTCTTTGAATACAAAGTCAATAACAAAACGCAAAAATAATTCCTCAACAATATCCCCAGAAagcaataatgataataaacataaaatcactaataaccacaaaattaaaaaatcatcacaTCTCTTAGAAGATCAGGAAGATTTTGAATTAGATGTGGGTCTAGATGATGGTCATAATATTAAGAAACAACGTTTTAACTCTTCAAGTAGTGATAAGATTTGGCCAACAAAACAAACAGAAGACACTTATAAATCGTTACTCTCTAATTTAGAGACAACCTTACAAAGTATAGATACATTGGTGGTGGGACCATCCACCAAAACAGAGAATATTATAAATGAAACACCGCAAGCACGACAAACCAAAcgtaaaattaaacaagagtctACCTCTACAGCCCAAAGAACCCAACAAGTTCAATTAACTAGAAACGATAAAGAACCAAATTCAACAACTAATACCAAAGGACGTAAAAATAAGTCAGCGGCTTCAAAACAAACCAAAGGACCTCAAATGATACATAcagaaaaaactttcataacaACGAATAATGAGGGAGGAACTGGAACTGGAGGTGGTGGCGGAGGAACGAGTAgaaagaaatcaaaatctatAATTACACGTACACAAACTACTACTGTAGATTTACTGCCTAAAACTTCGGCCATTGTCGATGATTATGATATAATATCCCCGGCCCTACAGCCACCTAAACAAATTAGTTCTAGTCCATTGCATATAAAACAAGAACAAGACAATCATATTCACTATCAACATCATCCACAACAACAATCGCAACAGCAGCatcatttattgaaaaatcctCCAAGTTCTAATCACAACTCTTCAGCTCGTACACAATCGACAACCCGCCATACCAATGCCAATGATCTCTATGATGCCCACCTATTGTTAGAGGCTTCTTGTCTACGCAATGATCTTGATGAATTTCTGCGATCTCcatcaaaatcggataaatCTAGACAACGTTTTACCAGTGAATCCTCTACACAATTTTTGGCTGAGCAATCCGAAGAAGaacaacatttaataaaaattgaacccACATCACCAGATTTAAGAGAAATTGTTAACGGTGCAAGTTCGGTTAATACCGCGGCAGCACAAGCTGATCTTGTAGAATTAGACGTTACCTCTAGTAAAAACCGTAGAACAAACAAATCTTCCAGAACCCAAAGAGTTTCTAATAGTAATcgtaaatatttagaatttacgGGAGATTTAGCAACAACAGAAGCCCCAATTGCCAATAAAAGACCACCAACGAATTTATTACATCATTCTACAACACTATCGACGTCTAGCAAATCTTCAAAATCTGCTCGCACTGAACCAAATAGCAAATCTGTAAAATCTATACAACATGCAACCAATACAACACCCTCTTATTTAGATTATCATATAGTGGATACCTTTAATACGGTAACAAGTTCCTCAACGAATAACAATAATTCATTTGCTTCGATTTCGGCCGTAGTGTCAGCCGCTGATGCCTCTGCTGCTGCAGCTCAACAAAATTCCTCATCAGCTGCAGCTGCACGTAAACCACAACGTTATTTTGAATGTGAAATGTGTAGCGCTATATTTTCAGATCGTGCTCAACTTTTGGACCATGTGCCCATACatatttaa
- Protein Sequence
- MDNHGYGGIQWIQHHSSNHSSHTGDMKTAGQLIIDPQPPREEDLMASANSSSDFMTTDNETDSATIAQIAAENLIFMARDGQMVTEIITNTTTDTNGTVVVTASDGEQIDCDTIIEQAALIQQHEDAGGGVYSVDHFVENTPQMVTEEVITDDWVQHQGEERVEIPAEQIIGSSSQVLLDIEVPLPTVQDEYTALRPYPCDFCSRRFRKKASLMNHMVAHQTDRPHLCKLCGARFLRRQDLINHLKGHAEEPTEPQMDDSDFIHFVTDTTNSPQRTSNDHYYEQDWSVPEDSVTIPTKSSRKHQQQLQHITSISNQQIIMENSITTTSTTSSGNILTSTHTTTVPPRGRISRLKPKEDTSYVVEVANSCPSGEMIISSAYSIVECDTLSANTAAVKLSQDNNSPALTENVDQNVLHYPIIDDSKPFVCQQCGLAFSREKAMLAHTKTHRNDSPYECPQCNELFWDQNSLQDHQKTHQFEESNSEYDPNEGEDETQTESESEQQLYGEFYCSECGMSFHRQDLLRRHAKCHNKGNGINTGETNVESKGQHCCNTCGETFAEALDLLAHAEIHARYPPFKCVLCGESFFEESTIKKHLQSQHPNEITENSCILCGKECRDRKALMKHAWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVQCDCYIGWQIISLSGMWKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDAKRGTYYCTVCGAELSSSGDLIQHLIQHSDMNTAMQRQPVTGPRKYKRRRKLKPHELARLQHDVKNNGGTGSDLDLSDFDIDNVDDLLAMTTDSNTAADAVTNVQDSQNNSLNTKSITKRKNNSSTISPESNNDNKHKITNNHKIKKSSHLLEDQEDFELDVGLDDGHNIKKQRFNSSSSDKIWPTKQTEDTYKSLLSNLETTLQSIDTLVVGPSTKTENIINETPQARQTKRKIKQESTSTAQRTQQVQLTRNDKEPNSTTNTKGRKNKSAASKQTKGPQMIHTEKTFITTNNEGGTGTGGGGGGTSRKKSKSIITRTQTTTVDLLPKTSAIVDDYDIISPALQPPKQISSSPLHIKQEQDNHIHYQHHPQQQSQQQHHLLKNPPSSNHNSSARTQSTTRHTNANDLYDAHLLLEASCLRNDLDEFLRSPSKSDKSRQRFTSESSTQFLAEQSEEEQHLIKIEPTSPDLREIVNGASSVNTAAAQADLVELDVTSSKNRRTNKSSRTQRVSNSNRKYLEFTGDLATTEAPIANKRPPTNLLHHSTTLSTSSKSSKSARTEPNSKSVKSIQHATNTTPSYLDYHIVDTFNTVTSSSTNNNNSFASISAVVSAADASAAAAQQNSSSAAAARKPQRYFECEMCSAIFSDRAQLLDHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259964;
- 90% Identity
- -
- 80% Identity
- -