Chom015876.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cochliomyia hominivorax
Gene Symbol
-
Assembly
GCA_004302925.1
Location
PYHX01003054.1:140491-146969[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.71 37 5.0 1.4 3 23 233 254 231 254 0.91
2 25 4.7e-05 0.0024 18.1 2.6 1 23 260 283 260 283 0.97
3 25 0.0002 0.011 16.1 0.9 2 23 313 334 312 334 0.97
4 25 0.0035 0.18 12.2 1.8 1 23 409 432 409 432 0.96
5 25 0.36 18 5.9 0.4 2 23 440 461 439 461 0.97
6 25 0.0026 0.14 12.6 1.2 2 23 506 527 505 527 0.97
7 25 0.066 3.4 8.2 0.2 2 20 540 558 539 561 0.93
8 25 0.00019 0.0097 16.2 4.4 1 23 641 664 641 664 0.96
9 25 0.0011 0.058 13.8 0.5 1 21 671 691 671 692 0.95
10 25 0.016 0.83 10.2 1.4 1 23 703 726 703 726 0.95
11 25 0.0015 0.08 13.4 0.4 2 23 741 762 740 762 0.97
12 25 1.4e-06 7.1e-05 23.0 2.6 1 23 768 790 768 790 0.98
13 25 0.054 2.8 8.5 1.5 1 23 934 958 934 958 0.97
14 25 1.3 69 4.1 1.3 1 23 995 1018 995 1018 0.92
15 25 0.0044 0.23 11.9 1.8 1 23 1028 1051 1028 1051 0.94
16 25 0.0088 0.46 11.0 2.5 1 23 1058 1080 1058 1080 0.95
17 25 0.0043 0.22 12.0 0.1 2 19 1107 1124 1106 1126 0.94
18 25 0.0015 0.079 13.4 5.0 1 23 1183 1206 1183 1206 0.97
19 25 0.084 4.4 7.9 1.2 1 23 1243 1266 1243 1266 0.97
20 25 0.06 3.1 8.4 6.2 1 23 1299 1322 1299 1322 0.97
21 25 5.5e-07 2.8e-05 24.2 0.8 2 23 1352 1373 1351 1373 0.95
22 25 1.6e-06 8.5e-05 22.7 0.4 1 23 1379 1401 1379 1401 0.99
23 25 6.3e-07 3.2e-05 24.0 2.6 1 23 1407 1429 1407 1429 0.98
24 25 4.5e-06 0.00024 21.3 1.8 1 23 1435 1457 1435 1457 0.99
25 25 0.012 0.63 10.6 0.8 1 22 1463 1484 1463 1487 0.91

Sequence Information

Coding Sequence
ATGTTGCGTTATAAGTGTCGAACTTGTTTTGATCCGGGTCGTTCAATACATTATCTATCGGATGAAGCGAGCGATACAAAAACTTGGAATGATTTATTACAGGATATTGCTAAGTTTCAGATCAACAACGAGAACTTACTACCAAAGACTATGTGCTGCAAATGTTCGGGAAAACTTAAAAGTTCCTACGATTTTATAATGCAGATACatgatgtaaataaaaaatattcggaATTATTGTCAAATTCCAATGATCCGCTACaggaaattgataattttaccgACTGCTTGGCAGAGACTACAATTGATTTGCCATTGGAAATTAAATTGGAGGAAGAAGTGATTGAACCATTTAACACcgatttaacaaacaaaatttcattgcaaaataaaacaaaatcagaaACAAAAGATGATTCCTTAATGGACGCTTTTAATGAAGACCAAGATAACACTTTTGAACAATTGGAAGAAAAAGAAAgacaGCTAAGTTtggatgatgatgacaatgatgattataaaaataattcaagCTCTGCATCATCCGATGAAAGCGATGATTATGTGCCcctcaaaaaatttaagaaagaaaaaagcaaTAATGTTAACAGCGACAGTCAACCAGTTAAACGTAGAAAAGGTCGACAAGCGCcagattattatgataaaattgaaaaagttaatGATCGTTTTGGATGTCTCATTTGTCAAAAAACATTTTCGTTGAAAAAAGATTGTGGTCGTCATATAGCATCCATACACTTACGTCATACCATGTTTCCTTGTGAATTTTGTGGACAAAGTTTTAGCCGCAAAGACAAGATACAACATCATATTAAGCGCATGCATTCGGATATAACTGTATATCCAGCTAAACATAAAGAATGGCTATTTGGAGATCGTTTATATAGCAAACCGATCGCTTGGAATGTTGTGCAATGTAAGCTATGTGACGTAACATTTAAATCAACTAAAGATCTTCGTCAACATTTGGAAAGTCACAGTGATATAGATTCACTTCATAACTTGGAATTAAGCGATGACACAATCCAACATTTGTTTCCCAATATGATAGACTTAGATTACGTCAAGGGAAGCATTTGTAAAGACATTGTTgataaaaattggtttaaataCTACACTGTATTGAATGAGCATTCCTATGAAATGTCCATTAGTGACACTGAGGCAGAGGATGCTAATGAAGATGCAAGAGAAGACAAATATAAATGCGATTTGTGTGCTCAATCATTTTCCTACAAATACCAGGTTTTCTCTCACTTGAAGGAGACTCATGAAAATGACGAGATACCTTTAAAGTGTGGTTTGTGCaaattggaatttatttcaatcaaaatgtACGAAGAACACTCGAAAACTCACTGTCGTAACAGACATAAGGTTTTACTTTGTGCCCATTGTCCAGCGAAGTTTGTTTGGCCCGTTAATATGAAAAATCACAATTGTGCCACCAAATTATCGCTGTCTGCACAAGCAACAGCAAAAGCTAAATTGACTTGTAATATATGTGAACGTAAATTCGAAGTTaagactaaatatttaaaacatttagagACTCACATTGATGGTAGACTTGTATCTTCGAAGACTATAATACGTTGTGCTCTTTGTCCGCAATCCTTTGAAAAATTACTACAATTGCGCCAACACATGCCCCAGCATTCTGATGGGAAAACTGGCATTGATTTTAAACATAGTCTCTATATAAAGCGTTTTGAACGTTCAAAAACTATTGATTTTGCATTGCTACAACAAGAGATACAGAACGCCTATAGAAAATCACAAATTAGTCGTTTTTATAGAGCTATTGATAAGGATGGCAACGAATTGGATATTTTAGATTCGGACAGTGACGTGGATGATCAAGTAGAAATTGttgatgaaaatgttaaaaaggaaTATACATGTGAACtatgtaatgaaaattttaaaagacgaaaaaatcttttaaaacatCAACATAACAATCACAACAATGTACCACTGCCCTTTAAGTGTAAGGATTGTACCCAGCAGTATGTCAGTAATGATTTGTTACAACAGCATTTACTTCGAGACTGTTGGAATGAACATCGGCGTATTGCACATCAATGTGATTATTGCAATGCCCGATTTATATGGCCATATAATCTCTTCAAGCACAAAGAAATTCAGcataaaaatcaAAAGCAACCAAAGCCCCAAAGATCAAGTACTCTTAAGTGTGAATTCTGCGAAAAGGTATTCATTTGGCCAAAGGATTTAGTTCGACACAGGAAGACTCATACCGAaggcaaaaaatttaattgtccCCATTGCGATCGTAAATTTCAACGCAAAGACAATTTATTATCGCACATTAGAATACATTGCCCCGATGGTATTCCCACAGTATCAAATACCGGTAAAGGAATCAACTATATACTGCCGCACTTGTTAAAGCCGCATGGTTGTAAACGAATCAAGTGCATGATCTGTTTTTCAGAACATAATCGAATACGTGATTTAAGGTCTCACCTGCGAACACATCGATTTTCGGTTAATTTcgataaaagaaaagaaaaggaaaCATTTGACACAATCTCATCGCAGCTCTATCCCGACGAATCGGTTCCCCTGACAGAAGAGGAAATAATTAAACGTATTAGTGCTGATATTGCAGCTGAAAACAGTTTAGAACGTTTCTATTCTATAACAAGTGAAAATGGTAACGAAGTTAGTTTAGACAGTTCGGAAACAGAAAGCGATTCCGATGATAATGACAATGAAGACGATGGATATGATAAATCTAAGCGTATTTACAAATGCGATTTATGTCCACAACTGGATTTTAATCGCAAATATAAACTTTTCGAACACCAAAACAAAGAACACAAATGGGAAGAAGCACGTCACATGTGTATACATTGTAATGGACGATTTCTATCGTCCTATATGCTGCAATTACACTATAAGAATCAAtgtaaaaatggtaaaaaacgTCACTTTTGTCGTCGTTGCCCTTTACGATTTATGTGGAAAAGTAATATGAAGGCACACATCGTAATGGAACATGGTCAAGAGatCGATATAAATCGCCGTCATGAATGTTTTCTATGCCAAGAAAAGTTTGCATTTCAAAGAGAATTAAAACGGCACTTAGCTAATGATCATTCCGCCGATGCAGCACTTCATTATTGTCTCCTTTGTCCAAAAACATTCTTTAATATTGAACATCTTAATGAGCACTTGAGTGGTCATCGTTTAACTACAGCCGATGTCACAACGGTAGAAAGTATAATTCATTCCACGTGTTGGCCAAATGGTGAAAAAATAATCAAGTGTAAAATATGTGGACTTACGTTTGATACAATGATCAATTTAAGGGAACATTTTTCACCCAGAAATCCCCAAAACTTGTGTTCCAGCCAACATTCATTATCGAATTACTCGATTACGAATCAAAAAGGATTTGAATTACATCTAGAACTGGATTCTGAAACCGAAGTAGAAGATGAAATGGATGTGAGTTCTAACAAAGACATAAATAAGAGACCAATGTATCCCTACAATTGTTGCATGTGTAGTATGTCGTTTAAGCGAAAGTATCAAATGGCTCAACATCAACGTTCTATGCACAATTATGAAGTGTTAGAGCTAAAATGTGATCGCTGCATATTTAGGACTGTCTCacaaAAAGTATTGGATTATCACAAGATCACACAGTGTTTTAATTCAGAGAAACAATATGAGTGTGTCcattgcaattttaaatttatgtggcAAGAGAATCTTGATAATCATATTGCCACATTTCATGCACCAAAAGATTTACCAAAggcaagtgatgatattattaAAATGGTTGCTTCTATTGAGCCTATACCAGCCAATAGCAAAAGtactacaaatatttttgaatgcaTGGATTGTCACCGTCGCTACAACCGTAAAGATCGTTATAAGgctcattttaaaaaatttcacagtaATGATTTGCACCTAAGAACTGATGCCAAGGTCTTTGCTACCAGACCACGCAAACATCCTACGAAAAGAAtggaaaagaaatttctatGTGCGTTTTGTGGTCTgtctttttcaaataattccaaTCTTACAGTCCACATGAGACGACATACGGGCGAGAAACCATTCAAATGTGACCTTTGCGATATGGCATTTCCACGAACATCTGATTTACAAGCTCACCGGAGAACCCACACTGGCGAACGCCCCTTTAAATGTGAGTACTGTGACAAATCATTTTCACGAcaatacaaattaaatgttCACAATCGCATTCACACCGGCGAACGTCCGTATCAGTgtacattttgtgaaaaatcattTATTCAATCGAACGATTTAACATTACATTTGCGTCGCCACACTGGTGAAAGACCTTACACTTGTGACATTTGCGGTGAAGGTTTCATATGTGCCACATCACTAAAGCAACATCGCAATTCAAGGGGTCATCAAGAGGAAAAAGATgatataaaaatgtgtgttcAGCAGATGACACAATtcgatatgaaattttaa
Protein Sequence
MLRYKCRTCFDPGRSIHYLSDEASDTKTWNDLLQDIAKFQINNENLLPKTMCCKCSGKLKSSYDFIMQIHDVNKKYSELLSNSNDPLQEIDNFTDCLAETTIDLPLEIKLEEEVIEPFNTDLTNKISLQNKTKSETKDDSLMDAFNEDQDNTFEQLEEKERQLSLDDDDNDDYKNNSSSASSDESDDYVPLKKFKKEKSNNVNSDSQPVKRRKGRQAPDYYDKIEKVNDRFGCLICQKTFSLKKDCGRHIASIHLRHTMFPCEFCGQSFSRKDKIQHHIKRMHSDITVYPAKHKEWLFGDRLYSKPIAWNVVQCKLCDVTFKSTKDLRQHLESHSDIDSLHNLELSDDTIQHLFPNMIDLDYVKGSICKDIVDKNWFKYYTVLNEHSYEMSISDTEAEDANEDAREDKYKCDLCAQSFSYKYQVFSHLKETHENDEIPLKCGLCKLEFISIKMYEEHSKTHCRNRHKVLLCAHCPAKFVWPVNMKNHNCATKLSLSAQATAKAKLTCNICERKFEVKTKYLKHLETHIDGRLVSSKTIIRCALCPQSFEKLLQLRQHMPQHSDGKTGIDFKHSLYIKRFERSKTIDFALLQQEIQNAYRKSQISRFYRAIDKDGNELDILDSDSDVDDQVEIVDENVKKEYTCELCNENFKRRKNLLKHQHNNHNNVPLPFKCKDCTQQYVSNDLLQQHLLRDCWNEHRRIAHQCDYCNARFIWPYNLFKHKEIQHKNQKQPKPQRSSTLKCEFCEKVFIWPKDLVRHRKTHTEGKKFNCPHCDRKFQRKDNLLSHIRIHCPDGIPTVSNTGKGINYILPHLLKPHGCKRIKCMICFSEHNRIRDLRSHLRTHRFSVNFDKRKEKETFDTISSQLYPDESVPLTEEEIIKRISADIAAENSLERFYSITSENGNEVSLDSSETESDSDDNDNEDDGYDKSKRIYKCDLCPQLDFNRKYKLFEHQNKEHKWEEARHMCIHCNGRFLSSYMLQLHYKNQCKNGKKRHFCRRCPLRFMWKSNMKAHIVMEHGQEIDINRRHECFLCQEKFAFQRELKRHLANDHSADAALHYCLLCPKTFFNIEHLNEHLSGHRLTTADVTTVESIIHSTCWPNGEKIIKCKICGLTFDTMINLREHFSPRNPQNLCSSQHSLSNYSITNQKGFELHLELDSETEVEDEMDVSSNKDINKRPMYPYNCCMCSMSFKRKYQMAQHQRSMHNYEVLELKCDRCIFRTVSQKVLDYHKITQCFNSEKQYECVHCNFKFMWQENLDNHIATFHAPKDLPKASDDIIKMVASIEPIPANSKSTTNIFECMDCHRRYNRKDRYKAHFKKFHSNDLHLRTDAKVFATRPRKHPTKRMEKKFLCAFCGLSFSNNSNLTVHMRRHTGEKPFKCDLCDMAFPRTSDLQAHRRTHTGERPFKCEYCDKSFSRQYKLNVHNRIHTGERPYQCTFCEKSFIQSNDLTLHLRRHTGERPYTCDICGEGFICATSLKQHRNSRGHQEEKDDIKMCVQQMTQFDMKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01259362;
90% Identity
-
80% Identity
-