Chom008993.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cochliomyia hominivorax
Gene Symbol
sip1
Assembly
GCA_004302925.1
Location
PYHX01001579.1:45121-48185[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.45 2.5e+03 -2.3 0.1 199 221 248 269 239 279 0.54
2 3 2.6e-93 1.4e-89 300.2 17.0 10 275 351 612 345 612 0.99
3 3 1.1 6e+03 -3.5 0.0 245 264 627 646 621 656 0.62

Sequence Information

Coding Sequence
atgtccGATAATGAATATGAACGTTTTGAAATAACAGACTATGATCTGGACAATGAGTTTAATCCCAATAGGTCGCGAAAAAAACAAACCAAACAGCACCAAATCTATGGTATTTGGGCTGATGAtagtgataatgatgatgatgaagaatcTTCTGGACGTCGTCGTGGTGGTCGCAAGGGTCGTATGGGTTTAGGTTCATCGGGTAGTCGTAGTAAGGATTACACAGCCCCCGTGAATTTTGTAGCTGGTGGCATACAACAGGCGGGcaagaaaaaagataaaaataaagttgaaaccGAGGAGGATAAAGAAAACCCTATAACTGATGAAGAAGATGAAATAAATGCTCGCCCTGGATTTGGTATAGGAGCAAGACCTACTTTAATGGATGTGGATTCGGCACACACTAGTGAGGAATCAGAAGAAGAACAGCTGAGTAGAAAGCAAACACAACAAAAACCCtcatattataaacaaaatcaagTGGGTAGTTCAAATGTGGGAGCTTGGGAACAACATACGCGTGGTATAGGAGCAAAATTGCTGTTACAGATGGGTTATAAGCCCGGTAAAGGTTTGGGTAAAGATTTGCAAGGTATATCACAACCTGTCGAGGCACATGTACGCAAAGGTAGAGGAGCTATAGGTGCTTATGGTCCCGAAACGGCTGCTAGTGTGGGAGGTAAAGGGcatAAACCTCAAATCGATGAAGATGTACGTGAGGctaaagaatttaaagaaaagttaaataagTGGAAGAAAGCTGTTGATTCTAAACAGGATAAAAGCTCTAAACGTTATTATTACAAATCTGTGGAGGAAGTTTTGGAGAAGGGCAAAAGTGCAAATTATATTATCAGCGATAATTTAAGCAAAAAACTTGGCAATGTGCCTGTTATCGATATGACTGGTCCCGAGAAACGAATATTAAGTGGTTATCATGCCATTGGCCAATCAAAAGTAATGGACGAAGATCTATATGATTTAAATGAGCAACCCAAAAAATCGGGTACTGCATTTGCCTTGCCTGAATTAATGCACAATCTCAaattacaacaaaattatgcAGCCGAGTACAAACAATTTGGTTTGGGTGATTTGGCCGCAGGAATTATAGCTCCTCTActgaaaaatcatttaagtgAATGGAAGCCATTGGATAATCCTACCTTGTATAtggacttaattaaaaaatggcgTTCTATTTTGGAGAGCCAAAATGATACCCAAAATGAAACTCGTTCCAATATATTTGATCCATATTCTTCTTTAGTATGGGCTGGTGTTATACCTAGTTTTCGTTCTTGTGCTGAATTTTGGGATCCTAAACAACATCAATCTATGGCGGCATTATTAGATTGTTGGGCTCCTTTATTTCCTACTTGGATTTTAGATTCGGTACTAGAACAATTAATATTGCCACGTATGAGTACGGCGGTAAAGAATTGGGATCCCTTAACAGATACTGTACCCATACATATATGGATTTTACCTTGGAATTCTATTTTGGGTcataaaatggaagaatttatttttcctactataagagaaaaattgggTAATGCTTTACAGGTTTGGATGCCACAAGATCGCTCGGCACGTGCCATGTTAACACCCTGGAAGGGAGCCTTCGATGATAGTGAGATGCAAGTATTCCTGCTGCAGCATATCATACCAAAACTACAAATGGTTTTGTCGGAATTTGTGATAAATCCTTTACAACAGGATTTGGAACCCTGGAATCAAGTTTGGGAATGGCATGAACTTATACCTGCCATACAAATGGCTCAacttttagataaatatttctttccCAAATGGATGCAAGTGCTTGTTTTATGGCTTAATCAATCTCCAGATTATAGTGAAATATCACGTTGGTATTCGGGTTGGAAAAGTATGTTCTCCGAGGAGATTCTAAGAGAACCCAGTGTTAAAGAACATTTACGTAGAGCTTTAGAAATAATGCATCGTGCTACTGATCAAATATCTACTACATTACCTATGAATAGCGGTAATAATATGGGTGCCAATATAACAGTAACACCAGTACCACCACCACCTCAACCACCACCGCCTCCCTCTCTGTTAGATCTACAAGTACCAGCTCCTACACAATTAGACTTTAAAGAATTGGTCTCACGTAAATGTGCCGAAAGAGGTGTATTATTTGCTCCTCTACCAGGACGCCGAGAATTGGGCAAACAAATTTATCGTGTCGGAAAgttatattgttatattgaTCGTAATGTTTGTATGATAAGCGATAGTACATTTAAGAATTGGATACCCACACCATTACAGCCCATGATAGAGAGGGCAATAACcggtattttaaattaa
Protein Sequence
MSDNEYERFEITDYDLDNEFNPNRSRKKQTKQHQIYGIWADDSDNDDDEESSGRRRGGRKGRMGLGSSGSRSKDYTAPVNFVAGGIQQAGKKKDKNKVETEEDKENPITDEEDEINARPGFGIGARPTLMDVDSAHTSEESEEEQLSRKQTQQKPSYYKQNQVGSSNVGAWEQHTRGIGAKLLLQMGYKPGKGLGKDLQGISQPVEAHVRKGRGAIGAYGPETAASVGGKGHKPQIDEDVREAKEFKEKLNKWKKAVDSKQDKSSKRYYYKSVEEVLEKGKSANYIISDNLSKKLGNVPVIDMTGPEKRILSGYHAIGQSKVMDEDLYDLNEQPKKSGTAFALPELMHNLKLQQNYAAEYKQFGLGDLAAGIIAPLLKNHLSEWKPLDNPTLYMDLIKKWRSILESQNDTQNETRSNIFDPYSSLVWAGVIPSFRSCAEFWDPKQHQSMAALLDCWAPLFPTWILDSVLEQLILPRMSTAVKNWDPLTDTVPIHIWILPWNSILGHKMEEFIFPTIREKLGNALQVWMPQDRSARAMLTPWKGAFDDSEMQVFLLQHIIPKLQMVLSEFVINPLQQDLEPWNQVWEWHELIPAIQMAQLLDKYFFPKWMQVLVLWLNQSPDYSEISRWYSGWKSMFSEEILREPSVKEHLRRALEIMHRATDQISTTLPMNSGNNMGANITVTPVPPPPQPPPPPSLLDLQVPAPTQLDFKELVSRKCAERGVLFAPLPGRRELGKQIYRVGKLYCYIDRNVCMISDSTFKNWIPTPLQPMIERAITGILN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-