Csep008305.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015573.1:68075178-68077216[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00065 9.4 7.7 0.1 26 44 144 162 137 166 0.91 2 5 0.0044 64 5.0 0.1 22 45 168 191 163 197 0.90 3 5 0.0048 69 4.9 0.0 26 50 200 224 192 226 0.84 4 5 0.0016 22 6.5 0.0 21 47 223 249 219 252 0.92 5 5 0.091 1.3e+03 0.8 0.0 25 43 294 312 279 316 0.80
Sequence Information
- Coding Sequence
- ATGGAATCGGATTATTCTTATGTTGAAGAAGTTGACTCAAAATCTGTTATCACAGCAAATATAATAAATTTCAGAAGAAAAAAAATTGACGAGCTAGCACACGAATTGAGGAGCCAGCCATCAGAATCGGAGATAATAATTTTGGATACGGACATTGCCCTCAAGCCAGAAACTCTACAAGTTCGGTTGAAGGAAGAAGATGAGTATGTTGAGATCGAAAACAACCAAGTTTGTTATGATGATACGGATTTCGTCGATGTGGATGGAAATTCTTATAAATTATTGGAAACGCAGGTTGAAGCCGAGATTGGATCCGAATTTCTTGATTTCGTGAATTCTGAGCTTGAGGAAGGAGAAATAAGAGATGGAAATAATTTCGAGTTATTGAAACAAAAATTCCCTTTCAGTAGTGGGCATGGTGTACAATTCGAATGTCCTATCTGTCAGAGAACCTTCTCACAGAAGGGAAATTTGTTTCGGCATTACCAAACTCACACAGGGGATAGACCTTTTGCCTGCAGATTATGTGGCCACAGATTCACTCAAAAATCAAATCTCCAAAAGCATCTTGCCACACATAATGGGGATAAAAGGTTTGAGTGTGGTGTGTGCAATAAAGGTTTTGTACAAAAGGCTAATCTTATAAGGCATCTACGGATCCATACTGGTGAGAAGCCCTTCCAATGTGATTTATGTGGTCATAAGTTTACCCAAAAGGGCAATCTCAATAAACATATGCAGCTGCACACATCTGACACTGAAAGTGTTTGCGATTTCTGCAACTGTAAATTCTCATCATATACAGCTAAAATGAGACATGAGACAAGTGTGCACAGCGAGAAATTTCCTGATTACGAAGAGGAGGATGAACAAAATGTAAACCAGTGTGACGAATGCCCTGCTTCATTTAGAACCAAACGGGCTCTTGTCAAACACAAGAAATACCATAAATAA
- Protein Sequence
- MESDYSYVEEVDSKSVITANIINFRRKKIDELAHELRSQPSESEIIILDTDIALKPETLQVRLKEEDEYVEIENNQVCYDDTDFVDVDGNSYKLLETQVEAEIGSEFLDFVNSELEEGEIRDGNNFELLKQKFPFSSGHGVQFECPICQRTFSQKGNLFRHYQTHTGDRPFACRLCGHRFTQKSNLQKHLATHNGDKRFECGVCNKGFVQKANLIRHLRIHTGEKPFQCDLCGHKFTQKGNLNKHMQLHTSDTESVCDFCNCKFSSYTAKMRHETSVHSEKFPDYEEEDEQNVNQCDECPASFRTKRALVKHKKYHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00349475;
- 90% Identity
- iTF_00349475;
- 80% Identity
- iTF_00349475;