Csep040818.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015575.1:27640781-27643647[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-05 0.27 12.6 0.2 21 46 195 219 189 221 0.80 2 4 2.1e-05 0.3 12.5 0.0 20 45 220 245 218 250 0.91 3 4 0.41 5.9e+03 -1.3 0.1 27 45 284 299 281 311 0.70 4 4 0.001 14 7.1 0.3 20 49 330 359 317 363 0.85
Sequence Information
- Coding Sequence
- ATGGATAATATATGCAGAACTTGTCTTAGAACCCAAGATTCTTTGTTCCCCCTGTTCGATCAAGCAGATATACTGAATAGAATTAAGGATATATCTTCTGTTCAGTTAACCCAAATATATGGCTATCCAACAAGAATATGTGAAGAATGTCTCTCTAACGTTAACAGATTATACAATTTCCGCAAGGTGATTCAGAATTCTGAATTAGAACTTCGTGAAAGATTTGCTGCAGAAGAGCGGGACAAATCGACACCAAAAGACAAGAAAACATCACGAAAACAAAATAAGGGAAATTTTGAGTTTGATGAAGAAGATGAGAAGCCCTTAATTTTTATCAAAACTGAATTAGAACAAGCTGAAAATGAACATATTAGAGATGAATGGTCCCCTGAACCAGATACAACAAATAATGATGATTTTAATTCAGAAAACGATTCTGATACTAAAATATTCAGAGATAATAATTTAAGAGAAGCTGAAGACTGTTCTAGACTTTTGTTGCCTGTGAAAAAGTGTTACTGCAAAGAATGTGGTATAGAATTTTCATCAAGATTTAAACTTTACAACCACAGAAGGACAAATCATGTAGTGCCAGGTGTTTGTAGTATTTGCGGTATCATTGTTAGGGCTGATAATTTGAGAAGACATGTTCAGCTTCACTCAGAAGGACCAGCATCATGCCATCATTGTGGAAAAGTTTTTAAGAATTCAGAATCTTTGAGGGGTCATTTATTGATTCATAAGGGTCACATATTTACTTGTGAGAAATGTGGTAAAACATCTAAAGTTCGTGCTGAGCATAGAAGACATATGAAAACACATGCAGATCCAGAAATCGGAAAAATGATGTGCAATATATGTGGGAAGAAAGTGAGAGATTTAAAAAAACATATGCATAGTCACACAGGAGAAAGACCCCACATTTGCAACTTTTGCCAAAAAGGTTTCACAAGTCCATATGCTTTAAAAGTGCATACACGACAACATACTAATGAAAGGCCATACGTTTGCAATATTTGTTCTTCTGCTTACCCACAAAAAGTATCTCTTGTCTCCCATTTGAAATCCAAGCATGGGATCAAGTATGAAAATCCCGAGTCTACCTGA
- Protein Sequence
- MDNICRTCLRTQDSLFPLFDQADILNRIKDISSVQLTQIYGYPTRICEECLSNVNRLYNFRKVIQNSELELRERFAAEERDKSTPKDKKTSRKQNKGNFEFDEEDEKPLIFIKTELEQAENEHIRDEWSPEPDTTNNDDFNSENDSDTKIFRDNNLREAEDCSRLLLPVKKCYCKECGIEFSSRFKLYNHRRTNHVVPGVCSICGIIVRADNLRRHVQLHSEGPASCHHCGKVFKNSESLRGHLLIHKGHIFTCEKCGKTSKVRAEHRRHMKTHADPEIGKMMCNICGKKVRDLKKHMHSHTGERPHICNFCQKGFTSPYALKVHTRQHTNERPYVCNICSSAYPQKVSLVSHLKSKHGIKYENPEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00965466;
- 90% Identity
- iTF_00349552;
- 80% Identity
- iTF_00349552;