Csep017583.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015581.1:14417088-14421458[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0013 0.22 13.3 0.5 1 23 727 750 727 750 0.95 2 17 0.003 0.5 12.1 0.8 1 23 753 776 753 776 0.97 3 17 0.85 1.4e+02 4.4 3.3 1 23 809 832 809 832 0.96 4 17 0.03 5.1 9.0 0.1 1 23 836 859 836 859 0.95 5 17 0.00039 0.066 14.9 1.2 1 23 894 917 894 917 0.96 6 17 0.083 14 7.6 0.8 1 21 941 961 941 964 0.89 7 17 0.0021 0.35 12.6 0.8 2 23 971 993 971 993 0.95 8 17 0.0012 0.2 13.4 0.1 1 23 999 1022 999 1022 0.97 9 17 0.0035 0.59 11.9 4.1 1 23 1028 1051 1028 1051 0.97 10 17 0.00035 0.058 15.1 3.3 1 23 1057 1080 1057 1080 0.98 11 17 0.00022 0.038 15.7 0.3 1 23 1086 1109 1086 1109 0.94 12 17 0.0081 1.4 10.8 1.7 1 23 1115 1138 1115 1138 0.96 13 17 0.0089 1.5 10.6 0.9 1 23 1144 1167 1144 1167 0.96 14 17 0.48 81 5.2 3.6 2 23 1175 1197 1174 1197 0.95 15 17 4.5e-05 0.0076 17.9 1.0 1 23 1203 1226 1203 1226 0.97 16 17 1.5 2.6e+02 3.6 2.6 1 23 1226 1249 1226 1249 0.92 17 17 0.00061 0.1 14.3 3.8 1 23 1255 1278 1255 1278 0.97
Sequence Information
- Coding Sequence
- ATGGTTACTATATTACAATGGAATATTAGATCTGTTTTCTCAAATATAGATAATCTAAGATTCCTGATAGAAGAGAACCCACCTACCGTGGTCCTCCTGACGGAGACTTGGCTCAGAGAGTTTCATAATCTGAAAATAGCGGGGTACAACATCCTCAGACAAGATCGAACGAATCAGATTGGAGGAGGCATTGTCTCTTTCATTGGGAACAATCTGGCTTTCGCTGAGATTCCCTTCCGTCTGTCGTCCTGCCCTAGTTCCGTTCAGATACAGGGTTTTATTATCCTCAACTTCAACCTCACAATTGTTAATATCTATTGCCCTCCAAGTGTTGTTCTGCCCCTATCCTTCTGGGACGAACTATTAACTGGCATTTCATCTCCGTTCATCATCAGTGGGGACTTGAATGCCCAGAATCCTAACTGGGGTTCCGGCTTTTTCACACAAAATGGTAAAATTCTGGAGGAGCTGCTGCTTCTTAATGATATATGTATCTTGAATGATGGCACCCCCACTAGAATAACTCCTCCGAACGCGAATCCAAGCGCTCCTGACATAACCCTGTGTTCTAGCGATATAGGGTTGATCTCCTTGTGGAAGGTTATCCCAGATCCAGGACGAAGTGACCATTTGCCAACTTTGACTTCCATTGGCATGGATTCCCAAATTCCCCCACATATCAGTTCCCATTTCTCCACTAGAAAGTATAGCATAGGAAGAGCGGATTGGTCCAAATATCAGCAAGTAATCATTGACGGTATGGAGTCACAGACTCCCAGATCCCTACAGGAGTTCAGAGATCGAGTGTTGGAGGCGGCTGAACATTCTATCCCTAGAAAACATCAACCCCGCCATTCTTCTTATAGAAAATCATGGTGGAATGAAGACCTCTCTGCCCTCGTTAAAAAAAGATCGCAGGCGTTTAAGGCCTACCTTGAGGATCCATCCATAGAGCAATTTCTACGAGCAAAAAATATCCAAGCGCTAACGAGGAACAAAATCCGACAAACCAAAAAAGACTCCTTTAGATCTTTTTGCGAAAATTTGTCCCCTCAAAATGCAAAAAAATTATGGTCCGACGTTAAAAAATTTAAATTAGGTTGTCGACCCCCAGTTATCCCGGTCTCCTCTCCCTCCTGTGGTCAGGAAATTCTCGAAAGACTGTGTCCATCCGGGCCCGTCATCCTTCAGCGACCTCCTCCACCCAGAGTTCATCGACCTCTGTCTTTTCCTCCAATTACGTTGGATGAGAAACTTTACGAAACATTCAACGATCCTCGCGATTTCCAATTTGGGTTCCGCAAAGGAAAATCAACTAATGACGCTCTATCCCTATTGATTTCGTCCATCTACTCCTCATTCAACCGTAATGAAGTCGTCTTAGTGGTTTTCCTAGACATCAAACAGGCATATGACTCTATACAGTTTCATCTCTTGGAGGACTCGTTGCTGTCCATCGGGGTTCCTCGACCTGTGATAGAGCTGCTTAGATCCGTGTTCGTCAATAGAAAGATATTCCTACTGGACCCATATTCTAAAAAAACTCTTGGTCCCAAACATTCCACCCTGGGCATATCTCAAGGCGCCCCAGAGAGTCCAGTCCTGTTCAATGTCTTCGTCAGAGACTTGCATTTATATGTTAACATTCCTGGTGTGACGGTTCTGAAATATGCTGATGATACCACGCTTGTAGTCTCGGCCCCCGATTTCCCTACAGCTTATCAAAAAATGACTCAGGCTTTATCTTCGGTTGAGAGGTGGGCCTCTTCCAAGCAATTTCAACTGTCGCCAAACAAAACAATCGCTCTCTGCTGCCATAAGACAGCGAAGTTGAACTCCAACCCACCCCTAAAATTGTGTGGGGCTGATATTCCAACTTGGTGGGGCTCTCAGCCTGAAACGCTGTTGCTGTTGTATAGGGCCATGGTTCGTCCATATCTCGATTATGGTTGTTCCTATTATGGGAATTGTCCTAAGACCCTCATGACCAGGATGGATCGGGTGCAGTACGCTGCGCTGCGAGTTGCTATGGGTTACATGAGATCCACTCCTATCCCCATCATTCTGGCCGAATCTAGGGAGTTACCGCTCAATATCCTTGAAGCCTTGCCTCTGCTGACTGCTGGATATTATTCCTCTCCTCACCTTCCTTGCTTCGCTCATTCTGGTTCTTTGAGGTACAGTTGCGAAAAGTGTGATTACTCTTCGGCGAGGAAGAAGGATGTCAGGAGGCACGTGGACTCGGTTCACCCAAAATTCAAATGCGAGATATGCAAATATGTTTCGAATAAAGAGGAAGATTTCCGAACGCACCAAGATACAGTTCACAGAGAACGTAAACCTTACAATTGTCGCTTGTGTGAATTCGCTACCGACTGTGAGGATGATTTGGAAATACATAAAGATTCCGCACATTCCAAGCGGTACAAATGCGCCAGCTGTGATTTCTGTACGAAATGGAGGAAAGAGCTCAGGAAACACTTGGATGTCTTTCACACAGAAAAATATGAATGCGATTCGTGTGAATTCGTTACGAATCAAGAAACCGACCTCCAAGCGCACCGAGATTCCATTCATTGCGATCCTGACACTCTCGACTGCAATCTATGCGAGTATATTGCGAATTGCACGAGTGACTTGAAAAAACATAAATCTTCAGTTCATCCTGACGCCCACAAATATAAATGCGACAAATGCGACTACTCTGCAAAGAGGCAAAGATTTCTTCTGAAACACATGGTTTCTGCCCATCCCGAATCCGAACGCGATGTTGATTCAAATTCGGAAAATGATGCTGTTACTGATGATTCCGATACTGAGCATAAATGCGACCAATGTGATTACGTTACGAAATGGAGAAAAGATCTCAGGAGGCACGCAGACGCCGTTCATCTAAATCATAAGCCGAATAGGTGCCGGCTGTGCGACTTTTCAACGAAAGAAAGTTATAACCTCCAAAGGCACATCGATTCAGTCCATCGCAACGCTTGGACTTTCAAATGCGAGTCTTGCGACTACGCCGCCAGCCAAAAGAAGGACCTCGAGGCCCACGTGCAATCAGTGCACGAGAATTCGAAACTTTTCAAGTGTACCTTATGCGACTACTCTTGCAATCGTAAAAATTATCTTGACCAACACACCAATTCCGTCCATTTGAAGCTATACCAGTACAAGTGTCCAGAATGCGTGTATTCTACAAACAGGAGGCACCATCTGGACAGGCACATCCAGTCGGTTCATTCAAACGCGAAGGAATTTCAGTGTCCCTTATGCGAGCACGCGACAAATCAAAAGGGCAATCTTAAAATCCACATGGATGCTGTTCACTCGAAAGCAAACCTGTTCAAGTGTCATATATGCGATTTTTGCACGGCATATAACACCGAACTCGTAGGGCATATAGATTCAATTCATTTCAACGAGAAAAAACATGAGTGTGCATTTTGCGATTATAGAACGAATAGGATTGGAGATCTCAGAAAACATGTAAATTCCGTTCATTCAACCTCGCAAAATACTATAAAGTGTCAGTCGTGTGATTATACGACCAATTGTTCACGGAATCTTAAGAGGCATACAGATACCGTACATCAGGAATACAAACCGTATAAATGTGAAATTTGCAATTATGCCACAGCTCACAAAAATAATCTCAAAAATCATGTGAATTCTGCTCATAAGTGTCACTTATGCGACTTTACCGCAGATCATGACGATGATTTAGGAAGGCATTTCGGCACTGTTCATCCTGATTTAGAGCTGTTTAAGTGTGATTTGTGTAAATATGTCGCAACTAGGAAAAACCATCTAAAACGACATTTACTTTCTTTCCACCCACAAATATGA
- Protein Sequence
- MVTILQWNIRSVFSNIDNLRFLIEENPPTVVLLTETWLREFHNLKIAGYNILRQDRTNQIGGGIVSFIGNNLAFAEIPFRLSSCPSSVQIQGFIILNFNLTIVNIYCPPSVVLPLSFWDELLTGISSPFIISGDLNAQNPNWGSGFFTQNGKILEELLLLNDICILNDGTPTRITPPNANPSAPDITLCSSDIGLISLWKVIPDPGRSDHLPTLTSIGMDSQIPPHISSHFSTRKYSIGRADWSKYQQVIIDGMESQTPRSLQEFRDRVLEAAEHSIPRKHQPRHSSYRKSWWNEDLSALVKKRSQAFKAYLEDPSIEQFLRAKNIQALTRNKIRQTKKDSFRSFCENLSPQNAKKLWSDVKKFKLGCRPPVIPVSSPSCGQEILERLCPSGPVILQRPPPPRVHRPLSFPPITLDEKLYETFNDPRDFQFGFRKGKSTNDALSLLISSIYSSFNRNEVVLVVFLDIKQAYDSIQFHLLEDSLLSIGVPRPVIELLRSVFVNRKIFLLDPYSKKTLGPKHSTLGISQGAPESPVLFNVFVRDLHLYVNIPGVTVLKYADDTTLVVSAPDFPTAYQKMTQALSSVERWASSKQFQLSPNKTIALCCHKTAKLNSNPPLKLCGADIPTWWGSQPETLLLLYRAMVRPYLDYGCSYYGNCPKTLMTRMDRVQYAALRVAMGYMRSTPIPIILAESRELPLNILEALPLLTAGYYSSPHLPCFAHSGSLRYSCEKCDYSSARKKDVRRHVDSVHPKFKCEICKYVSNKEEDFRTHQDTVHRERKPYNCRLCEFATDCEDDLEIHKDSAHSKRYKCASCDFCTKWRKELRKHLDVFHTEKYECDSCEFVTNQETDLQAHRDSIHCDPDTLDCNLCEYIANCTSDLKKHKSSVHPDAHKYKCDKCDYSAKRQRFLLKHMVSAHPESERDVDSNSENDAVTDDSDTEHKCDQCDYVTKWRKDLRRHADAVHLNHKPNRCRLCDFSTKESYNLQRHIDSVHRNAWTFKCESCDYAASQKKDLEAHVQSVHENSKLFKCTLCDYSCNRKNYLDQHTNSVHLKLYQYKCPECVYSTNRRHHLDRHIQSVHSNAKEFQCPLCEHATNQKGNLKIHMDAVHSKANLFKCHICDFCTAYNTELVGHIDSIHFNEKKHECAFCDYRTNRIGDLRKHVNSVHSTSQNTIKCQSCDYTTNCSRNLKRHTDTVHQEYKPYKCEICNYATAHKNNLKNHVNSAHKCHLCDFTADHDDDLGRHFGTVHPDLELFKCDLCKYVATRKNHLKRHLLSFHPQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00349489;
- 90% Identity
- iTF_00349488;
- 80% Identity
- iTF_00349489;