Csep015433.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015581.1:14378944-14383314[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0013 0.21 13.3 0.5 1 23 710 733 710 733 0.95 2 17 0.0029 0.5 12.1 0.8 1 23 736 759 736 759 0.97 3 17 0.84 1.4e+02 4.4 3.3 1 23 792 815 792 815 0.96 4 17 0.03 5 9.0 0.1 1 23 819 842 819 842 0.95 5 17 0.00039 0.065 14.9 1.2 1 23 877 900 877 900 0.96 6 17 0.082 14 7.6 0.8 1 21 924 944 924 947 0.89 7 17 0.0021 0.35 12.6 0.8 2 23 954 976 954 976 0.95 8 17 0.0012 0.2 13.4 0.1 1 23 982 1005 982 1005 0.97 9 17 0.0034 0.58 11.9 4.1 1 23 1011 1034 1011 1034 0.97 10 17 0.00034 0.058 15.1 3.3 1 23 1040 1063 1040 1063 0.98 11 17 0.00022 0.037 15.7 0.3 1 23 1069 1092 1069 1092 0.94 12 17 0.008 1.3 10.8 1.7 1 23 1098 1121 1098 1121 0.96 13 17 0.0087 1.5 10.7 0.9 1 23 1127 1150 1127 1150 0.96 14 17 0.47 80 5.2 3.6 2 23 1158 1180 1157 1180 0.95 15 17 4.4e-05 0.0075 17.9 1.0 1 23 1186 1209 1186 1209 0.97 16 17 1.5 2.6e+02 3.6 2.6 1 23 1209 1232 1209 1232 0.92 17 17 0.0006 0.1 14.3 3.8 1 23 1238 1261 1238 1261 0.97
Sequence Information
- Coding Sequence
- ATGGTTACTATATTACAATGGAATATTAGATCTGTTTTCTCAAATATAGATAATCTAAGATTCCTGATAGAAGAGAACCCACCTACCGTGGTCCTCCTGACGGAGACTTGGCTCAGAGAGTTTCATAATCTGAAAATAGCGGGGTACAACATCCTCAGACAAGATCGAACGAATCAGATTGGAGGAGGCATTGTCTCTTTCATTGGGAACAATCTGGCTTTCGCTGAGATTCCCTTCCGTCTGTCGTCCTGCCCTAGTTCCGTTCAGATACAGGGTTTTATTATCCTCAACTTCAACCTCACAATTGTTAATATCTATTGCCCTCCAAGTGTTGTTCTGCCCCTATCCTTCTGGGACGAACTATTAACTGGCATTTCATCTCCGTTCATCATCAGTGGGGACTTGAATGCCCAGAATCCTAACTGGGGTTCCGGCTTTTTCACACAAAATGGTAAAATTCTGGAGGAGCTGCTGCTTCTTAATGATATATGTATCTTGAATGATGGCACCCCCACTAGAATAACTCCTCCGAACGCGAATCCGAGCGCTCCTGACATAACCCTGTGTTCTAGCGATATAGGGTTGATCTCCTTGTGGAAGGTTATCCCAGATCCAGGACGAAGTGACCATTTGCCAACTTTGACTTCCATTGGCATGGATTCCCAAATTCCCCCACATATCAGTTCCCATTTCTCCACTAGAAAGTATAGCATAGGAAGAGCGGATTGGTCCAAATATCAGCAAGTAATCATTGACGGTATGGAGTCACAGACTCCCAGATCCCTACAGGAGTTCAGAGATCGAGTGTTGGAGGCGGCTGAACATTCTATCCCTAGAAAACATCAACCCCGCCATTCTTCTTATAGAAAATCATGGTGGAATGAAGACCTCTCTGCCCTCGTTAAAAAAAGATCGCAGGCGTTTAAGGCCTACCTTGAGGATCCATCCATAGAGCAATTTCTACGAGCAAAAAATATCCAAGCGCTAACGAGGAACAAAATCCGACAAACCAAAAAAGACTCCTTTAGATCTTTTTGCGAAAATTTGTCCCCTCAAAATGCAAAAAAATTATGGTCCGACGTTAAAAAATTTAAATTAGGTTGTCGACCCCCAGTTATCCCGGTCTCCTCTCCCTCCTGTGGTCAGGAAATTCTCGAAAGACTGTGTCCATCCGGGCCCGTCATCCTTCAGCGACCTCCTCCACCCAGAGTTCATCGACCTCTGTCTTTTCCTCCAATTACGTTGGATGAGTTTCATCTCTTGGAGGACTCGTTGCTGTCCATCGGGGTTCCTCGACCTGTGATAGAGCTGCTTAGATCCGTGTTCGTCAATAGAAAGATATTCCTACTGGACCCATATTCTAAAAAAACTCTTGGTCCCAAACATTCCACCCTGGGCATATCTCAAGGCGCCCCAGAGAGTCCAGTCCTGTTCAATGTCTTCGTCAGAGACTTGCATTTATATGTTAACATTCCTGGTGTGACGTTTCTGAAATATGCTGATGATACCACGCTTGTAGTCTCGGCCCCCGATTTCCCTACAGCTTATCAAAAAATGACTCAGGCTTTATCTTCGGTTGAGAGGTGGGCCTCTTCCAAGCAATTTCAACTGTCGCCAAACAAAACAATCGCTCTCTGCTGCCATAAGACAGCGAAGTTGAACTCCAACCCACCCCTAAAATTGTGTGGGGCTGATATTCCGTGGGTCGAACAAACAAAATATTTGGGAGTTACCATCCATCAAAACCTGAAATGGAATACGCACATTGAAAGAATGTGTGCCGGAGCTTCCCAAGGAGTTAATTTGATGAAGTCGTTGTGCAGAACTTGGTGGGGCTCTCAGCCTGAAACGCTGTTGCTGTTGTATAGGGCCATGGTTCGTCCATATCTCGATTATGGTTGTTCCTATTATGGGAATTGTCCTAAGACCCTCATGACCAGGATGGATCGGGTGCAGTACGCTGCGCTGCGAGTTGCTATGGGTTACATGAGATCCACTCCTATCCCCATCATTCTGGCCGAATCTAGGGAGTTACCGCTCAATATCCTTGAAGCCTTGCCTCTGCTGACTGCTGGATATTATTCCTCTCCTCACCTTCCTTGCTTCGCTCATTCTGGTTCTTTGAGGTACAGTTGCGAAAAGTGTGATTACTCTTCGGCGAGGAAGAAGGATGTCAGGAGGCACGTGGACTCGGTTCACCCAAAATTCAAATGCGAGATATGCAAATATGTTTCGAATAAAGAGGAAGATTTCCGAACGCACCAAGATACAGTTCACAGAGAACGTAAACCTTACAATTGTCGCTTGTGTGAATTCGCTACCGACTGTGAGGATGATTTGGAAATACATAAAGATTCCGCACATTCCAAGCGGTACAAATGCGCCAGCTGTGATTTCTGTACGAAATGGAGGAAAGAGCTCAGGAAACACTTGGATGTCTTTCACACAGAAAAATATGAATGCGATTCGTGTGAATTCGTTACGAATCAAGAAACCGACCTCCAAGCGCACCGAGATTCCATTCATTGCGATCCTGACACTCTCGACTGCAATCTATGCGAGTATATTGCGAATTGCACGAGTGACTTGAAAAAACATAAATCTTCAGTTCATCCTGACGCCCACAAATATAAATGCGACAAATGCGACTACTCTGCAAAGAGGCAAAGATTTCTTCTGAAACACATGGTTTCTGCCCATCCCGAATCCGAACGCGATGTTGATTCAAATTCGGAAAATGATGCTGTTACTGATGATTCCGATACTGAGCATAAATGCGACCAATGTGATTACGTTACGAAATGGAGAAAAGATCTCAGGAGGCACGCAGACGCCGTTCATCTAAATCATAAGCCGAATAGGTGCCGGCTGTGCGACTTTTCAACGAAAGAAAGTTATAACCTCCAAAGGCACATCGATTCAGTCCATCGCAACGCTTGGACTTTCAAATGCGAGTCTTGCGACTACGCCGCCAGCCAAAAGAAGGACCTCGAGGCCCACGTGCAATCAGTGCACGAGAATTCGAAACTTTTCAAGTGTACCTTATGCGACTACTCTTGCAATCGTAAAAATTATCTTGACCAACACACCAATTCCGTCCATTTGAAGCTATACCAGTACAAGTGTCCAGAATGCGTGTATTCTACAAACAGGAGGCACCATCTGGACAGGCACATCCAGTCGGTTCATTCAAACGCGAAGGAATTTCAGTGTCCCTTATGCGAGCACGCGACAAATCAAAAGGGCAATCTTAAAATCCACATGGATGCTGTTCACTCGAAAGCAAACCTGTTCAAGTGTCATATATGCGATTTTTGCACGGCATATAACACCGAACTCGTAGGGCATATAGATTCAATTCATTTCAACGAGAAAAAACATGAGTGTGCATTTTGCGATTATAGAACGAATAGGATTGGAGATCTCAGAAAACATGTAAATTCCGTTCATTCAACCTCGCAAAATACTATAAAGTGTCAGTCGTGTGATTATACGACCAATTGTTCACGGAATCTTAAGAGGCATACAGATACCGTACATCAGGAATACAAACCGTATAAATGTGAAATTTGCAATTATGCCACAGCTCACAAAAATAATCTCAAAAATCATGTGAATTCTGCTCATAAGTGTCACTTATGCGACTTTACCGCAGATCATGACGATGATTTAGGAAGGCATTTCGGCACTGTTCATCCTGATTTAGAGCTGTTTAAGTGTGATTTGTGTAAATATGTCGCAACTAGGAAAAACCATCTAAAACGACATTTACTTTCTTTCCACCCACAAATATGA
- Protein Sequence
- MVTILQWNIRSVFSNIDNLRFLIEENPPTVVLLTETWLREFHNLKIAGYNILRQDRTNQIGGGIVSFIGNNLAFAEIPFRLSSCPSSVQIQGFIILNFNLTIVNIYCPPSVVLPLSFWDELLTGISSPFIISGDLNAQNPNWGSGFFTQNGKILEELLLLNDICILNDGTPTRITPPNANPSAPDITLCSSDIGLISLWKVIPDPGRSDHLPTLTSIGMDSQIPPHISSHFSTRKYSIGRADWSKYQQVIIDGMESQTPRSLQEFRDRVLEAAEHSIPRKHQPRHSSYRKSWWNEDLSALVKKRSQAFKAYLEDPSIEQFLRAKNIQALTRNKIRQTKKDSFRSFCENLSPQNAKKLWSDVKKFKLGCRPPVIPVSSPSCGQEILERLCPSGPVILQRPPPPRVHRPLSFPPITLDEFHLLEDSLLSIGVPRPVIELLRSVFVNRKIFLLDPYSKKTLGPKHSTLGISQGAPESPVLFNVFVRDLHLYVNIPGVTFLKYADDTTLVVSAPDFPTAYQKMTQALSSVERWASSKQFQLSPNKTIALCCHKTAKLNSNPPLKLCGADIPWVEQTKYLGVTIHQNLKWNTHIERMCAGASQGVNLMKSLCRTWWGSQPETLLLLYRAMVRPYLDYGCSYYGNCPKTLMTRMDRVQYAALRVAMGYMRSTPIPIILAESRELPLNILEALPLLTAGYYSSPHLPCFAHSGSLRYSCEKCDYSSARKKDVRRHVDSVHPKFKCEICKYVSNKEEDFRTHQDTVHRERKPYNCRLCEFATDCEDDLEIHKDSAHSKRYKCASCDFCTKWRKELRKHLDVFHTEKYECDSCEFVTNQETDLQAHRDSIHCDPDTLDCNLCEYIANCTSDLKKHKSSVHPDAHKYKCDKCDYSAKRQRFLLKHMVSAHPESERDVDSNSENDAVTDDSDTEHKCDQCDYVTKWRKDLRRHADAVHLNHKPNRCRLCDFSTKESYNLQRHIDSVHRNAWTFKCESCDYAASQKKDLEAHVQSVHENSKLFKCTLCDYSCNRKNYLDQHTNSVHLKLYQYKCPECVYSTNRRHHLDRHIQSVHSNAKEFQCPLCEHATNQKGNLKIHMDAVHSKANLFKCHICDFCTAYNTELVGHIDSIHFNEKKHECAFCDYRTNRIGDLRKHVNSVHSTSQNTIKCQSCDYTTNCSRNLKRHTDTVHQEYKPYKCEICNYATAHKNNLKNHVNSAHKCHLCDFTADHDDDLGRHFGTVHPDLELFKCDLCKYVATRKNHLKRHLLSFHPQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00349489;
- 90% Identity
- iTF_00349489; iTF_00349490; iTF_00349491;
- 80% Identity
- -