Cfuc004353.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- Znf800
- Assembly
- GCA_001014335.1
- Location
- JXOR01000935.1:308740-312024[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0073 21 4.7 0.0 13 49 245 281 241 286 0.87 2 3 0.59 1.7e+03 -1.4 0.0 27 48 289 310 287 313 0.86 3 3 4.9e-07 0.0014 18.1 0.0 23 51 550 578 538 580 0.91
Sequence Information
- Coding Sequence
- ATGGccgataataaaaatttgtcgAATGCAAAAGATGATCTTAGTGTATTACGGAAACCAATTAAGACATCAATAAATGGCATTTtagaattgataaaaatttatgaagaaGGCACAATTGAAgtGAAGCAATTGTTAAAAAATGAATGTGATATTATCTATGAATGTCGCGTTTGTCGGAGTATGTTCCGAAGTTTATTGAACTTTATTAGTCATAAAAGGATTTACTGTAATTCTCGTTTTAATGCCACCCATCATAATTTTTTCCGTTCCGATGGGTTCATAGATCAAGAACTTTCAACAATCATAAATGCTGAACAAGAATATGTGCAACCAAATTTATCTCAGGCGaatgtgaaattaaagaaaacgaataaatcCCAAACAGATGTACGAAGAAAAGACTTGACCTCAattgttgaaaaattattatcgaaaCAGAAGGATAATTGTTTACTCaaattaactgatttttatGATCAAATCAATACAAAGTTAACACAGGAGGATATTCTTGTGAAATATTCCAATTTACAATTAGATAATATACCGGATTCTAATGTGGCTGTGTATCAATCGTTAGACATTAAGCAAGAAGagcaaacaataaaaactgaagtaaatgaaattcatcaactgttattgaaaaatgaaacagtaTTGGGTCCTGACGGAAAGTCAATTAGTTTGAATACTTCTCCAGAAACTCCAAATATAATACATGATGATTCAGAGGACCCAAACACACAAAACTATGAAATAGAACCATTTTCGTGTGATATTTgtAACTGTAAATTCGCTACACAAAAGACATTAAAGTTGCATTTGAAAACGAAACATATTCCTACAACATTTGTATATCCATGCCCAACATGTTCAAAGACATTCCTACAACCAGCTGCTGTATTAAGACATCTCAGTAATGATCACAAGAAATCTGCAAAGCGTATACGAATGATGAGAGAAAATATTCTTAAGAAACGGATTCGTGCAAATGAAGTACAATTAAAATCGGCCAATCGTGAATTAACACAACTGCAAAGAGACAAAAtggatgataaaaataaatcgtggaatttaaataacgACGATTCCCATGTCTTACCAACCTGTAGTCATTGTGGAAAGCAATTTGAAAGAAAAGCCGTGTTAACTGCACATATGATGTCTTGTTCCCAGAAGAATATACGCCAACTTGTAGCAAAAAAGAAAGTTATTCCAAATACGACAAAAACCAGTATTGAATGTCctataattaacaataatcaatgtattaataatgatgatacATCAAATTCAACTGATAGTTTCGGTGATTTACctactaaaaatataattggaaaatcaaatttccATAGCAAATTGGAAACTAATCGTATAGTGTTAGATAGTACTGATAGCATTGAAACTGCAAACAATGACACGGATAAAGATTctctaataaataaaagaaaaccgaaaCGTACATTAAAGACAGTAAAATGTGAAGGtaacacaattattaattcagaACTGGTAAATGGTGTTGAGCCAGAGGTATTTTGGGAAATGGGAAAGGAAGGAAATCTTAGTTTAAAGGCAAAGACGTTCCATGAGGTACCTGATATACAATCAACTAAAGAATCAGTTCTTGGGAGTATCAATACCGAGAGTGCTACTTGTTCTATATGTGGTAAGACTTTTGCGAATCATAGTAATTTGAGAAGACATATCTCATTGTACCACTATAGCAAAGAGAAGAGtattaattattgttgtaAATTGTGCGACTATCAGGCACATCGTAAATCAGACGTTATATTTCATATGGGTAgtgtacataatttaatgggAGATTTGAATATTGTATCAGAATTCATTGTGGAAAAGTCCGTTGATTTAACAAGTTTCGATATGAATGCAGATTATACCATAACTgagaacaataaatttattcaaagcCAAGTAATATTACCAATTGAAGAATGTACAGTTGATGTTAAGGCAAATTTACTGGAAGTATCGACTGATGAAGTAAATGATGCTGTTGGTGGAAACacggaaaataataataagaaacgtGGTAGACCTAAAGGTAGTAAGACCAATTCGCCAGACCTGACTGAGGAACGGAAACCTATGAAAATAACACGATCATCTCAAGTTGCAGAAAATCAATCATTAACAACGATTACCGGAAATACAAATAAACGACCAGTACGCAATCGTATTAAACCAGTTAATAAGGATTTTGTATATGATTTATCGAATCTGTTAAAAAAGGATTCTGACGTACAAAAATTGTACAAGGAACAGCAACAATTTTTATCTCTTCCACAAAATGCGCAATTAAAAAAAcgtaattttcttcaattaacCGATGGCATTTCAAAACTAGGGAAATCTAAGAGTCTAAATCAAAAAAGTTTATTAgcactaaaattcaattatgaagaGAACGAAGTAAGAAAAGCCGCACTTAAAATGGCAATAGATGCAGTTGAGAAACGTCAGGCTGTATTTGATATACCAAACCGTATGTGTTCCAAACCAATTATTGATGGTTTTGAAAATTTTAGCAGTAGATGTGATTTAACTGTGACTCTaggaaataaaagaagagTTTCAGATGATGAGTTGTTACatagaaagaaaacaagaaaatgtaTGGATGGCTTAGAAACAGCAACTTCAACCTCAAcgtctaatttaattaaattgaatagtaAACTACAGATTCCGGTATCCTTGAGTGgtactgaaataaaattagtaaGTAAATCGGCTGATAATTCAGAAGATGAAATAAGAGAAGAGGAGAAAATTACCGTAAAGTGTCCAAcggaaattgaatttcaacagTATCTAATCGCAAATAAGATAGCTAAACCAGTATGCTCTGATGAACCAGAAAACTTAAAGCGATCAATATATAATAATACATCGCCAAACAGTAACAGAATATCAGTTCTACAACGTATGAATGAGAATAAAGCTAAACAGAAACAACAACACAGTTTATTAAGGAAGTCAAAGGagttaaaatttgaaaatgatgataatgatcAACAAAAATCATCCAGTCAAGCAGTAGATATTTGA
- Protein Sequence
- MADNKNLSNAKDDLSVLRKPIKTSINGILELIKIYEEGTIEVKQLLKNECDIIYECRVCRSMFRSLLNFISHKRIYCNSRFNATHHNFFRSDGFIDQELSTIINAEQEYVQPNLSQANVKLKKTNKSQTDVRRKDLTSIVEKLLSKQKDNCLLKLTDFYDQINTKLTQEDILVKYSNLQLDNIPDSNVAVYQSLDIKQEEQTIKTEVNEIHQLLLKNETVLGPDGKSISLNTSPETPNIIHDDSEDPNTQNYEIEPFSCDICNCKFATQKTLKLHLKTKHIPTTFVYPCPTCSKTFLQPAAVLRHLSNDHKKSAKRIRMMRENILKKRIRANEVQLKSANRELTQLQRDKMDDKNKSWNLNNDDSHVLPTCSHCGKQFERKAVLTAHMMSCSQKNIRQLVAKKKVIPNTTKTSIECPIINNNQCINNDDTSNSTDSFGDLPTKNIIGKSNFHSKLETNRIVLDSTDSIETANNDTDKDSLINKRKPKRTLKTVKCEGNTIINSELVNGVEPEVFWEMGKEGNLSLKAKTFHEVPDIQSTKESVLGSINTESATCSICGKTFANHSNLRRHISLYHYSKEKSINYCCKLCDYQAHRKSDVIFHMGSVHNLMGDLNIVSEFIVEKSVDLTSFDMNADYTITENNKFIQSQVILPIEECTVDVKANLLEVSTDEVNDAVGGNTENNNKKRGRPKGSKTNSPDLTEERKPMKITRSSQVAENQSLTTITGNTNKRPVRNRIKPVNKDFVYDLSNLLKKDSDVQKLYKEQQQFLSLPQNAQLKKRNFLQLTDGISKLGKSKSLNQKSLLALKFNYEENEVRKAALKMAIDAVEKRQAVFDIPNRMCSKPIIDGFENFSSRCDLTVTLGNKRRVSDDELLHRKKTRKCMDGLETATSTSTSNLIKLNSKLQIPVSLSGTEIKLVSKSADNSEDEIREEEKITVKCPTEIEFQQYLIANKIAKPVCSDEPENLKRSIYNNTSPNSNRISVLQRMNENKAKQKQQHSLLRKSKELKFENDDNDQQKSSSQAVDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00348430;
- 90% Identity
- iTF_00348430;
- 80% Identity
- iTF_00348430;