Cfuc000833.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- sba
- Assembly
- GCA_001014335.1
- Location
- JXOR01000800.1:18921-62601[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.1e-11 1.6e-07 30.3 0.0 5 69 84 143 81 151 0.79 2 3 4.7 9.3e+03 -4.2 0.0 57 72 759 774 746 775 0.78 3 3 2.3 4.5e+03 -3.2 0.0 34 57 1221 1245 1214 1252 0.74
Sequence Information
- Coding Sequence
- atggcAGCGGATAGTACGGGAACACTGCAACCAGGATGCATAAATGGATCTGGTATTGGTCAATCAATTGGCCAAatccaacaacagcaacaatataataatcaaattgtaaatcaaCAAAGGTTATCAACAGCATTTGTAACATCACAATCAgcttatttaaataataatcaaataagtGTACATACAAATTCGgaaaaatgtgaaacaaatGATAATACTAGTggcaatttaattggaaatgaattaaCACCGGTGCAAAGTAATTTACCAAATGGTTGGCGTCGTGTACTCGTCAACGGTGATGTTGTGTATATAAGCCCATCTGGTGCCACATTAAGGAATATTGAACAAATTAAGGAATACTTATTAAGCACCGGCACTTGTAAATGTGGTGTACCATGTCCAGTGAAACCGGATTTcttctttgattttaattcacgGGTGCCAACGGTTCCATTGCAAATAATACGAGATGGTACAGCAATTCGCAATACACCTTGTATTCATCATCGAAGATTTTTGGAGAATCAAAAACGGCTGTTACGTTTAATGGATGGTAAAAAGAGGAAATTAGAATCTCtatcatcatcaaattcatCGTCACCAGTACCTGGTCAAACAGCAGGCGGATACATTATGACGAATActcaaaataatttagttgttGGAACAAATGATCAACGTTTATTGGCACCGGTTATCTATGATCCTAATGGACAAACGGGTCAATTAGTAGCATCTGGTCaaccaaatattatttatcaatcGGATCAAGTATCAatggcaaataataatttgaatacaattggtCCAGGTAATATAATAAGAACACCACCATGGAAACGAGTAACGGTTCTTAAtcaacaccaacaacaacaattgattcagcaacaacaacaacagcaatcGATACAACAAAACATCACACAAATCGATAATCAACGAGTACCACCGCTTCCATTGACTCATATCCAAGCTAATCAGTTTACTGTTCAGTCCGATCAACAGCAAGTGCAACTGAATACGGACGATAGTGAAAAACGGATGAAGAAAGTCAAGACGTCTTTCAAAAAGCGGCCCACATTTAAGGATGATCCCACTGGGTACTTGAACCAGCAGACAGCATTACTACAAAATACCATTTTGAATGTACAAACGCCTGactatgatgatgataatcaAACGCCGAAAGATGATGATACGGTACagccaataaattatttacaaccAAAAACTGATATGATGAATCATATAACAAATGGTAACAATATGAATCGattaaatcaaacaatattACAGCCGAATcaacaaacaatttatcaatgtaatacgaatggtaacaaaatattaattggtacaaatgaacaacaacagcagcaagTAAGAATTATATCAAATCAACAGCCATTTGTGATGGCATCACatcaacagcagcaacagcaacaacaacatcagccacaatttaaaattcaatcaaaagcGGGTGATCAAACTATTTTTACATCGGCTGGTACCGTtatgaataatcaaataattcaaaatccACAAATATTACAACATCAAATAATTGGTAATACTGTAATGACACCAGCCGGTATGAGTATACCAAATGGTTGTATACAAATGGGTAAAACAGTATTTAGTGCTGGTGTACAACCACGTATGTTGACACCACAACAAATTGTGGTCCAACAGCCATCAATTCAAAtgcaatcaaatcaaatgatcAATCCTGAACAAATACAAACTGTATCAAATGCcaatcaacagcaacaacaaatgaTTATGTCTAATTCACAAGGATTTGTatccaattcaaatataattcaaaccATGTCTGGCCAAAATCAAGtgttaatgataaataatCCTCATATGGAAATGGGCCAACCGAAACAACAGCAACGGATTGGTTTACAAGCAGTTACAACATTACCAAATGGtatgatacaaataaataatcaaaactgTGATAcgaatcaattaaaacaacagaaacatcaaaatatcatttatcagCAACAATTTCAACAacagaatcaaattaaaaagatTAAATCCGCTAAAGAATTAccgaaaataattgaaaatattgattgttCACTGATTGAGTCTCAAGTAACATCCAGTTATGTAATGAATCAATCTGGTTCAGATGAAATGTCTGGGGATTCAGAACCAGCACAAGTTGGCGCTATTTCGACCAGCCATGAGAGTCCCATTCTACAGACACCCTCACCCGCTGAATCACCTGAATCATTTTCAAGTCAATCGTCTTCATCAAACACTCAAATGAAGAATTTTGATATCcaacaaaagaatttattgtTGGCTGCCCAAACAAGCAGcaaaaatacaattacatCAGTGTTGGCTGGCAAAGCTAATACAGCAACGACCACAATGAaggcaaataatttaatgcatcGGCCAAAACAAAAGATTGTAACACTTCCAAATGGTCAAACGATTATCCAGAATTGTATACCAATGAatccaaatattcaaatgcaGCAATTAACAAATGAGAATACGAATCAAATCTTAATGACATCATCAGGACAAATAATTGTGATGCCACAGCAGCAGAAaccatcaaatcaaataatcttaaataattcaaataatacaattatgatGAATCCGGATGGTACaacatcattgaataatttacacAATGGCAATACTAATGAGCCAATGTTAATGGATAATGGCCAAGGACAATTACATCAAGAGATGATACAAAATACATCACAAATATTAACACCAAATGGTGgaacaaatcaaaataataattttataatgacACCAGCCAATAATTTACAACAAGTTCTATTTAATGGAACAAATTTAGTTCAATCAAATGCACAAACAATAAATAGTTCTGTAACAAATAATCGTAATTTAAtgcagcagcagcaacaacaacaacaggcAAATACAGGTATCATAACAACAGCTAATAATCCAAAAGTAATAACAAATGCtggtaatttattacaaaCTCAAGGCACTgtgataaattcaaataaccaTCAGAtgattgtaaataattcaaatggtatgATATCACCAAATAACGGTGGTTTTATGGGCCAACAAGTGGTATTAAATACACTATCAAATGGTTATATGATTCAACCACATACGGTTGATaatcagcaacaacaacaacaacaacagcatcatgcaatgaatcaattaattaatcaagAAATGTCTGGACAATTTcgttcaaataataaaattataatgacatcaaatttaataaaacggAAAGCAAAGAAACGTAAAAGTGATAGTCCATCTAGTTCGAAGTCATCAACACCGGAAAGTTTGTCGCCCCAGCAATCACCTCAAATGCAACAACAAACATTGGTGACTGGTACAACACAGCCAGGTACAATTCTTCAATTGGCTCCACAATTTCCAGCTCAaggttttcaattaaattcaccaaTGCAAGGAATGCAAGGTATTACATTggtccaaaataaaaatatgccAACGAATGCCCAACAAATCATTTTACCAAATGGTCAAACATTAATacaaccattgaatttaattggacAACAATTGATTATGCCAGCGGGTTTAATGATGGCACCCGATACTACATTattacaaatacaaaatatggCACAATGTAATGGTATATTGGCATCACCGCAAGGTATGATGATTGGCTCATCAaatcaacaacagaaaaattttttatcacCAAATAGTGGTGGCGGCCaacaattcataatgaatcaaaatggCCAATTGAGTCCAATTGCTCAAGTTTATTCAACACCAATGGGTCTAATGACAAATTCAGCTGCTGGTTTTCTTCAGCAACAAAATACGTTATTACAACAAtcacaaaattcattaataaatacaGTGAATAATGGTAGTTTGAttgaacaacaaaatcaatcaGCCGATGGTAGTCAATTAAATCAACAGCATTTAGGTGCGACATCACCACCTGATACTACGACCCATAGTCCAATACCGGAGAGACCGTCAAGTGAAAAGAGTGGTGGCAGTGATAATATGGTGCCATGTGTATCAAGTTCAGAACAGGATATTATATGTTCATCACCTGATCGAGATGGTATTCAATATACAACACAAATTGATGGAGATGGAGgtatTTCTTATCAACTGAATGGCAATAAACCATCCGATTCTAAGATAATGAGATTAGATAATGATCATCAGCAACAGTATACAATGGTGTCTTATgccaatatgaataaaatttgtacaAGTGaCTCACCTGTATTGGCAACATCATCAACTGCATCAATTACCACAACTACAAGTGGATCAATTAAACCAATAACTATATCGATGACATCGTCGTCAAATAGTCcaacatattcaattggtgAATTAGTATGGGGTAAAGCGCGTGGCCATCCAGCTTGGCCGGGTAAAGTGATATCACCACCACCGGATGGTGTTACCACATCAACCGATTCCCTGTGGGTCCGATGGTTTGGTGGACGaccaaatattgaattagtggctattgataaattaaaaagcCTTTCTGATGGTCTCGAGGCACATCATAAAGCCCAAAAGGATACCAGAAAGAGccgaaaattaaattcacaattagAAAATGCAATTCAAGAAGCAATGACTGAATTGGATCGTATGGCAAGTAGTAGTATATCATCAGTGTCAAGTAATTCACCAACGAGTAGTATCAGTCCATCGATGCAAGGTCGTTCCAAGTCTCGTGCGaatcatatgaaaacaaaTGCAGTTCAATTGAGAAGTAAACCAGTTAAGATTGCACCAGCACCAGCACCAGCTCCTCCGTCCAATATGggacagaataataaaattttaaagaatatcAAATGA
- Protein Sequence
- MAADSTGTLQPGCINGSGIGQSIGQIQQQQQYNNQIVNQQRLSTAFVTSQSAYLNNNQISVHTNSEKCETNDNTSGNLIGNELTPVQSNLPNGWRRVLVNGDVVYISPSGATLRNIEQIKEYLLSTGTCKCGVPCPVKPDFFFDFNSRVPTVPLQIIRDGTAIRNTPCIHHRRFLENQKRLLRLMDGKKRKLESLSSSNSSSPVPGQTAGGYIMTNTQNNLVVGTNDQRLLAPVIYDPNGQTGQLVASGQPNIIYQSDQVSMANNNLNTIGPGNIIRTPPWKRVTVLNQHQQQQLIQQQQQQQSIQQNITQIDNQRVPPLPLTHIQANQFTVQSDQQQVQLNTDDSEKRMKKVKTSFKKRPTFKDDPTGYLNQQTALLQNTILNVQTPDYDDDNQTPKDDDTVQPINYLQPKTDMMNHITNGNNMNRLNQTILQPNQQTIYQCNTNGNKILIGTNEQQQQQVRIISNQQPFVMASHQQQQQQQQHQPQFKIQSKAGDQTIFTSAGTVMNNQIIQNPQILQHQIIGNTVMTPAGMSIPNGCIQMGKTVFSAGVQPRMLTPQQIVVQQPSIQMQSNQMINPEQIQTVSNANQQQQQMIMSNSQGFVSNSNIIQTMSGQNQVLMINNPHMEMGQPKQQQRIGLQAVTTLPNGMIQINNQNCDTNQLKQQKHQNIIYQQQFQQQNQIKKIKSAKELPKIIENIDCSLIESQVTSSYVMNQSGSDEMSGDSEPAQVGAISTSHESPILQTPSPAESPESFSSQSSSSNTQMKNFDIQQKNLLLAAQTSSKNTITSVLAGKANTATTTMKANNLMHRPKQKIVTLPNGQTIIQNCIPMNPNIQMQQLTNENTNQILMTSSGQIIVMPQQQKPSNQIILNNSNNTIMMNPDGTTSLNNLHNGNTNEPMLMDNGQGQLHQEMIQNTSQILTPNGGTNQNNNFIMTPANNLQQVLFNGTNLVQSNAQTINSSVTNNRNLMQQQQQQQQANTGIITTANNPKVITNAGNLLQTQGTVINSNNHQMIVNNSNGMISPNNGGFMGQQVVLNTLSNGYMIQPHTVDNQQQQQQQQHHAMNQLINQEMSGQFRSNNKIIMTSNLIKRKAKKRKSDSPSSSKSSTPESLSPQQSPQMQQQTLVTGTTQPGTILQLAPQFPAQGFQLNSPMQGMQGITLVQNKNMPTNAQQIILPNGQTLIQPLNLIGQQLIMPAGLMMAPDTTLLQIQNMAQCNGILASPQGMMIGSSNQQQKNFLSPNSGGGQQFIMNQNGQLSPIAQVYSTPMGLMTNSAAGFLQQQNTLLQQSQNSLINTVNNGSLIEQQNQSADGSQLNQQHLGATSPPDTTTHSPIPERPSSEKSGGSDNMVPCVSSSEQDIICSSPDRDGIQYTTQIDGDGGISYQLNGNKPSDSKIMRLDNDHQQQYTMVSYANMNKICTSDSPVLATSSTASITTTTSGSIKPITISMTSSSNSPTYSIGELVWGKARGHPAWPGKVISPPPDGVTTSTDSLWVRWFGGRPNIELVAIDKLKSLSDGLEAHHKAQKDTRKSRKLNSQLENAIQEAMTELDRMASSSISSVSSNSPTSSISPSMQGRSKSRANHMKTNAVQLRSKPVKIAPAPAPAPPSNMGQNNKILKNIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -