Cmed089390.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr31:3609911-3621468[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.58 38 4.8 0.3 1 18 65 82 65 82 0.93 2 19 0.0086 0.56 10.6 1.4 1 23 259 282 259 282 0.92 3 19 0.00021 0.014 15.7 0.1 2 23 307 328 306 328 0.96 4 19 0.0067 0.44 10.9 1.8 1 23 350 372 350 372 0.94 5 19 2.7e-05 0.0018 18.5 0.6 1 23 376 398 376 398 0.98 6 19 0.017 1.1 9.7 0.2 1 23 403 426 403 426 0.95 7 19 0.42 28 5.3 4.3 2 20 434 452 433 456 0.88 8 19 0.001 0.068 13.5 1.9 1 23 463 486 463 486 0.97 9 19 0.00019 0.013 15.8 0.7 1 23 492 514 492 514 0.98 10 19 0.00036 0.024 14.9 0.4 1 23 520 542 520 542 0.99 11 19 2.5e-05 0.0017 18.6 1.5 1 23 548 571 548 571 0.96 12 19 0.01 0.67 10.4 0.3 9 23 634 648 623 648 0.90 13 19 1.1 70 4.0 0.3 2 23 677 699 676 699 0.90 14 19 1.3 85 3.7 0.2 1 23 721 743 721 743 0.96 15 19 0.00065 0.043 14.1 0.8 1 23 747 769 747 769 0.98 16 19 0.0029 0.19 12.1 1.4 1 23 774 797 774 797 0.93 17 19 0.002 0.13 12.6 0.4 2 23 833 855 832 855 0.95 18 19 0.0013 0.083 13.2 3.3 2 23 862 883 862 883 0.96 19 19 0.00023 0.015 15.6 1.9 1 23 889 911 889 911 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTACAAGACGAATCCTCCCAATCCGAAATAAATACAGTTTTCGGAAGATGCCGATGCTGCCTCGACTATGGTTACATGAAGAGTATGTGGGAGGAACATAATGGAGAGGACGAGCGTGAAATTTATGGCGAAATGCTAATGGAGACCTTTTCCATTGCATGGGACGCAACTGAAGACAGCAACTCGTTCATCTGCGATATGTGTGTGAAGCGACTGCGGGACGCCTACAATTTCAAGAAAGAGGTGCTGGCATCCGAAGTGATAATTAATGAGAACTCAGATGAGGAAATGGATGATACCCAAGATGATATGGAGCAATACACGATAGAGGTATTGGAAGAAGAAGAGGAGATGGAGATTAAGGAGGAGAATGAGTATGAGGAGGTTGAGTACTTGGAGGAGTATGCCGGGGTGGTGGAGGAGGCAACTGGGAAGTCGGTGGAAGTACCGAAAACAGGGGTGAAAAGAAACAGAAAGGCGGTTACGAAACACTATAAGAACTACTCTGCGAGTGACATGAGGAAAGCGTTAGCTGAAATACTTGAGAATCAAATGAGTGTGAACGATGCGTCCGAAAAATACAACGTTCCTAAGAAGACTTTGCTGACCAAACTGTACGACTTGAAGAATAAAAAAGTTGGCGCGGGGCCCAAACAAACAACTCGCCACAAAAAACTTCAAGAGAATTTGCTCAAACACAAGGAGAACTTACGCACAATCATGGACTGGTCCAACGCGACCCCAATTAAAGGAATAGTAAAAGACAACTTTGCCTGTTGCTTTTGTGACAAAACATATAAACTAGCGAAAGAATTGAAAGTACATAACATAATGGCCCACAAACGCTGCCTTGCGGCACTCCATTTGAAATACACTCTGTATTACACTATTCGGTTAGATATAACTGATTTGAAATGCAAAATTTGCGGCCAAACATTGCCAACGCTCGAAAATCTGCTTTCACATCTGGAAATTCACGGGAAAGTCATAAACAAGGATATAAAAAATCAATTGATCCCGTTTACTTTTCCAAATAATAACTTTACTTGTATCCAATGTAACCGCATATTTAAATATTTCAAAAGTCTAACACAACATATGATTGAGCATTACAAGATATTTGAATGTAATGATTGCGGTCGTGGTTTTATGAATAAAAGGGATATAACAAAACATGTGATGAGACATCAGACTGAGATATATACATGTGCATACTGTCCAAAGCAGTTCTTAAATCGAGAACAAGTGATAAGCCACGAGAGATTAGTGCATCGTTTGAATAGTAAGCAATTGAAGTGTAGATATTGTACGGAACGTTTCAGTTATAAGAAGTTGAGGAATAAGCATGAAGTTGAATGTCATGGTGTTTTAATGGAAAAATTCGAATGTAAGATATGTCATAAGACATTGTCAAGTGATAATAGGTTGATTGAGCATATGAAGATAAAGCATTTGAAAGAAACAAGGTTTTATTGTGAGATTTGTTCTAAAGGATTCTACTTCAAAAGAGCTATGGAGGACCATATGATAACACATACGAAGGAGAAGAAGTTCAAATGCGAACTGTGTCCGAAGCTTTTGTCAAGGCAAAGGGCGTTAGTTGTACACTTGAAGAAGCATTTTGGTGAAAAAAGGTTCCATTGTGAATACTGTGGGGTGAGATTCATACAGAAAGTAGAATTGAAGAGTCACTTGCGGGCGAAACATGGCGAAGCATATGAGATAATTCTATCATTCACAGATGACCTGGATTCACTGATGAAGCAGAAAACCGTCGACGCCCACTACAGACTAGTGGAAGACATAACGACGGTCCTCACGTACACCACAGCGACGCCTTTCAAGGTCAAAGCGAGCCAGTTCTACTGCGCTTTTTGCTACACCAACGTCGACAGCTTCGACCGACCTTCCAATCTAAGGTCCCACATGAAAAACCATGACGAAGACATCTTTCACACCTTAGACAAAGTCATGCGACCTCAGTTTCAAAACGAAGTTTTGAGAGTCGATATCGTTGATTTGAGCTGCAAAGTCTGCAAAACGGAAATTCCATCGTGGAACGATATGTTCCAACATTTGTTTGAGAAGCATGGCGAGGAATTGGATCAGGCGTACACGAAATTGATTCCTTATAAGTTGATAAATCAGTCCAATTTCACGTGCGGTCTTTGTGCATCGGAGTTTCCGAATTTCCAATTCTTAGATCTTCATATGAACGCTCATTTCTGTAATTACATGTGCTCGGATTGTGGTGATACTTTTGTAACGGAAGTTCGATTGAAACATCACCAATTGATTCATAATACGGGCAAGTTTCCGTGCAGTCACTGCGGTAAGATTTTCTCTTTGGAGAAGTATAGGAAGAAACACGAAGCTATGGTACATCAAGAGTTCAAAATGTTCAAGTGTCAGTGTGGTGAAGAATTCCATAAGGAATACGAAAGGCATTTACACGTGATGGAAAAGCATCCGGAACGAGTGAGGATAAGCACATGTGAGTATTGTGGGAAAACGTTCGATTGGAGACCGTACTATTTGGCTCATTTGAGGAAAACTCATAGTACGTATAAGAAGAATGTTTGCAGGTATTGTAATAAGCGTTTTGTGACTAAACATGAGGTGAAACAGCATGAGTTGAGGCATACGGGGGATGGGAAACATGTCTGTGTGTTTTGTGAGAAGAGGTTTGTTACTCCGGTTGAGTTGAGGAAACATTCGAAGAGGCATATAAGAGAGGTAGTTGTACAGAGCGATGATTATGAAGCTTCATGA
- Protein Sequence
- MSVQDESSQSEINTVFGRCRCCLDYGYMKSMWEEHNGEDEREIYGEMLMETFSIAWDATEDSNSFICDMCVKRLRDAYNFKKEVLASEVIINENSDEEMDDTQDDMEQYTIEVLEEEEEMEIKEENEYEEVEYLEEYAGVVEEATGKSVEVPKTGVKRNRKAVTKHYKNYSASDMRKALAEILENQMSVNDASEKYNVPKKTLLTKLYDLKNKKVGAGPKQTTRHKKLQENLLKHKENLRTIMDWSNATPIKGIVKDNFACCFCDKTYKLAKELKVHNIMAHKRCLAALHLKYTLYYTIRLDITDLKCKICGQTLPTLENLLSHLEIHGKVINKDIKNQLIPFTFPNNNFTCIQCNRIFKYFKSLTQHMIEHYKIFECNDCGRGFMNKRDITKHVMRHQTEIYTCAYCPKQFLNREQVISHERLVHRLNSKQLKCRYCTERFSYKKLRNKHEVECHGVLMEKFECKICHKTLSSDNRLIEHMKIKHLKETRFYCEICSKGFYFKRAMEDHMITHTKEKKFKCELCPKLLSRQRALVVHLKKHFGEKRFHCEYCGVRFIQKVELKSHLRAKHGEAYEIILSFTDDLDSLMKQKTVDAHYRLVEDITTVLTYTTATPFKVKASQFYCAFCYTNVDSFDRPSNLRSHMKNHDEDIFHTLDKVMRPQFQNEVLRVDIVDLSCKVCKTEIPSWNDMFQHLFEKHGEELDQAYTKLIPYKLINQSNFTCGLCASEFPNFQFLDLHMNAHFCNYMCSDCGDTFVTEVRLKHHQLIHNTGKFPCSHCGKIFSLEKYRKKHEAMVHQEFKMFKCQCGEEFHKEYERHLHVMEKHPERVRISTCEYCGKTFDWRPYYLAHLRKTHSTYKKNVCRYCNKRFVTKHEVKQHELRHTGDGKHVCVFCEKRFVTPVELRKHSKRHIREVVVQSDDYEAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00347424;
- 90% Identity
- iTF_00347424;
- 80% Identity
- iTF_00347424;