Basic Information

Insect: Cnaphalocrocis medinalis
Gene Symbol: -
Assembly: GCA_014851415.1
Location: Chr31:3609911-3621468[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.6e-09 4.4e-06 26.1 0.0 4 38 174 209 173 214 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.6e-09	4.4e-06	26.1	0.0	4	38	174	209	173	214	0.90

Sequence Information

Coding Sequence: ATGTCTGTACAAGACGAATCCTCCCAATCCGAAATAAATACAGTTTTCGGAAGATGCCGATGCTGCCTCGACTATGGTTACATGAAGAGTATGTGGGAGGAACATAATGGAGAGGACGAGCGTGAAATTTATGGCGAAATGCTAATGGAGACCTTTTCCATTGCATGGGACGCAACTGAAGACAGCAACTCGTTCATCTGCGATATGTGTGTGAAGCGACTGCGGGACGCCTACAATTTCAAGAAAGAGGTGCTGGCATCCGAAGTGATAATTAATGAGAACTCAGATGAGGAAATGGATGATACCCAAGATGATATGGAGCAATACACGATAGAGGTATTGGAAGAAGAAGAGGAGATGGAGATTAAGGAGGAGAATGAGTATGAGGAGGTTGAGTACTTGGAGGAGTATGCCGGGGTGGTGGAGGAGGCAACTGGGAAGTCGGTGGAAGTACCGAAAACAGGGGTGAAAAGAAACAGAAAGGCGGTTACGAAACACTATAAGAACTACTCTGCGAGTGACATGAGGAAAGCGTTAGCTGAAATACTTGAGAATCAAATGAGTGTGAACGATGCGTCCGAAAAATACAACGTTCCTAAGAAGACTTTGCTGACCAAACTGTACGACTTGAAGAATAAAAAAGTTGGCGCGGGGCCCAAACAAACAACTCGCCACAAAAAACTTCAAGAGAATTTGCTCAAACACAAGGAGAACTTACGCACAATCATGGACTGGTCCAACGCGACCCCAATTAAAGGAATAGTAAAAGACAACTTTGCCTGTTGCTTTTGTGACAAAACATATAAACTAGCGAAAGAATTGAAAGTACATAACATAATGGCCCACAAACGCTGCCTTGCGGCACTCCATTTGAAATACACTCTGTATTACACTATTCGGTTAGATATAACTGATTTGAAATGCAAAATTTGCGGCCAAACATTGCCAACGCTCGAAAATCTGCTTTCACATCTGGAAATTCACGGGAAAGTCATAAACAAGGATATAAAAAATCAATTGATCCCGTTTACTTTTCCAAATAATAACTTTACTTGTATCCAATGTAACCGCATATTTAAATATTTCAAAAGTCTAACACAACATATGATTGAGCATTACAAGATATTTGAATGTAATGATTGCGGTCGTGGTTTTATGAATAAAAGGGATATAACAAAACATGTGATGAGACATCAGACTGAGATATATACATGTGCATACTGTCCAAAGCAGTTCTTAAATCGAGAACAAGTGATAAGCCACGAGAGATTAGTGCATCGTTTGAATAGTAAGCAATTGAAGTGTAGATATTGTACGGAACGTTTCAGTTATAAGAAGTTGAGGAATAAGCATGAAGTTGAATGTCATGGTGTTTTAATGGAAAAATTCGAATGTAAGATATGTCATAAGACATTGTCAAGTGATAATAGGTTGATTGAGCATATGAAGATAAAGCATTTGAAAGAAACAAGGTTTTATTGTGAGATTTGTTCTAAAGGATTCTACTTCAAAAGAGCTATGGAGGACCATATGATAACACATACGAAGGAGAAGAAGTTCAAATGCGAACTGTGTCCGAAGCTTTTGTCAAGGCAAAGGGCGTTAGTTGTACACTTGAAGAAGCATTTTGGTGAAAAAAGGTTCCATTGTGAATACTGTGGGGTGAGATTCATACAGAAAGTAGAATTGAAGAGTCACTTGCGGGCGAAACATGGCGAAGCATATGAGATAATTCTATCATTCACAGATGACCTGGATTCACTGATGAAGCAGAAAACCGTCGACGCCCACTACAGACTAGTGGAAGACATAACGACGGTCCTCACGTACACCACAGCGACGCCTTTCAAGGTCAAAGCGAGCCAGTTCTACTGCGCTTTTTGCTACACCAACGTCGACAGCTTCGACCGACCTTCCAATCTAAGGTCCCACATGAAAAACCATGACGAAGACATCTTTCACACCTTAGACAAAGTCATGCGACCTCAGTTTCAAAACGAAGTTTTGAGAGTCGATATCGTTGATTTGAGCTGCAAAGTCTGCAAAACGGAAATTCCATCGTGGAACGATATGTTCCAACATTTGTTTGAGAAGCATGGCGAGGAATTGGATCAGGCGTACACGAAATTGATTCCTTATAAGTTGATAAATCAGTCCAATTTCACGTGCGGTCTTTGTGCATCGGAGTTTCCGAATTTCCAATTCTTAGATCTTCATATGAACGCTCATTTCTGTAATTACATGTGCTCGGATTGTGGTGATACTTTTGTAACGGAAGTTCGATTGAAACATCACCAATTGATTCATAATACGGGCAAGTTTCCGTGCAGTCACTGCGGTAAGATTTTCTCTTTGGAGAAGTATAGGAAGAAACACGAAGCTATGGTACATCAAGAGTTCAAAATGTTCAAGTGTCAGTGTGGTGAAGAATTCCATAAGGAATACGAAAGGCATTTACACGTGATGGAAAAGCATCCGGAACGAGTGAGGATAAGCACATGTGAGTATTGTGGGAAAACGTTCGATTGGAGACCGTACTATTTGGCTCATTTGAGGAAAACTCATAGTACGTATAAGAAGAATGTTTGCAGGTATTGTAATAAGCGTTTTGTGACTAAACATGAGGTGAAACAGCATGAGTTGAGGCATACGGGGGATGGGAAACATGTCTGTGTGTTTTGTGAGAAGAGGTTTGTTACTCCGGTTGAGTTGAGGAAACATTCGAAGAGGCATATAAGAGAGGTAGTTGTACAGAGCGATGATTATGAAGCTTCATGA
Protein Sequence: MSVQDESSQSEINTVFGRCRCCLDYGYMKSMWEEHNGEDEREIYGEMLMETFSIAWDATEDSNSFICDMCVKRLRDAYNFKKEVLASEVIINENSDEEMDDTQDDMEQYTIEVLEEEEEMEIKEENEYEEVEYLEEYAGVVEEATGKSVEVPKTGVKRNRKAVTKHYKNYSASDMRKALAEILENQMSVNDASEKYNVPKKTLLTKLYDLKNKKVGAGPKQTTRHKKLQENLLKHKENLRTIMDWSNATPIKGIVKDNFACCFCDKTYKLAKELKVHNIMAHKRCLAALHLKYTLYYTIRLDITDLKCKICGQTLPTLENLLSHLEIHGKVINKDIKNQLIPFTFPNNNFTCIQCNRIFKYFKSLTQHMIEHYKIFECNDCGRGFMNKRDITKHVMRHQTEIYTCAYCPKQFLNREQVISHERLVHRLNSKQLKCRYCTERFSYKKLRNKHEVECHGVLMEKFECKICHKTLSSDNRLIEHMKIKHLKETRFYCEICSKGFYFKRAMEDHMITHTKEKKFKCELCPKLLSRQRALVVHLKKHFGEKRFHCEYCGVRFIQKVELKSHLRAKHGEAYEIILSFTDDLDSLMKQKTVDAHYRLVEDITTVLTYTTATPFKVKASQFYCAFCYTNVDSFDRPSNLRSHMKNHDEDIFHTLDKVMRPQFQNEVLRVDIVDLSCKVCKTEIPSWNDMFQHLFEKHGEELDQAYTKLIPYKLINQSNFTCGLCASEFPNFQFLDLHMNAHFCNYMCSDCGDTFVTEVRLKHHQLIHNTGKFPCSHCGKIFSLEKYRKKHEAMVHQEFKMFKCQCGEEFHKEYERHLHVMEKHPERVRISTCEYCGKTFDWRPYYLAHLRKTHSTYKKNVCRYCNKRFVTKHEVKQHELRHTGDGKHVCVFCEKRFVTPVELRKHSKRHIREVVVQSDDYEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00347639;
90% Identity: iTF_00347639;
80% Identity: iTF_00347639;