Cmed083250.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cnaphalocrocis medinalis
Gene Symbol
Hr39
Assembly
GCA_014851415.1
Location
Chr4:15051954-15075796[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.15 1.1e+03 -1.5 1.6 68 169 60 188 29 196 0.43
2 4 2 1.6e+04 -6.4 9.3 98 185 221 308 145 344 0.51
3 4 6.1e-08 0.00048 19.4 0.1 1 20 421 440 421 446 0.91
4 4 4.3e-66 3.4e-62 211.0 0.0 157 408 479 739 451 739 0.85

Sequence Information

Coding Sequence
ATGTCCGGCCCGGAGACCAATAACGTGAAATTCTCATACAGCTCCAGTGGAGTTCGGATCAGCGTTTCTTCGGAACCGCACGATGAAGACTCCACGGACGCTGAAATTTCCAAAATAGACTTCACACAACATCAAAATGAGGTTAACATGCGTAATAAGAAGAAGCGACCCTCCAGCGGGGCTCAGTGTGAGCCGCAGTCCAACGACCGGGAGCGGCCCATGTCCTGGGAGGGGGAGCTATCCGACTCCGAGATGGTCATAGACACCAGCGTCAATAATGACGAAAACAGCAGTTCTCTAGACCTGCAGTCGTCCCGGGACTCGATAGACACGCTTCGGAATGTGACTATCAAAACGGAGCCGATCAAGACTGAAGCCTTCCAGAGCCTCGACGACCAGAGGGTGCTGGACCTAAAGTACCCCGCCGCGCTGCAGTCGCATCAGAGGAGTCTCAGTATGAACAGGATATCGGTGCTAACAGACAACACGTCCCTCTCGCTGGTGCGGCGGCCGTCGTCTCCCACCAGCAGTGCCAAGTCCCTAGTCCTGGATCAGAACACGATGCCAATCATGCCGCAGACCTCGCTGGGGGAGGTGCAGAACTTGACCATCAAGAAAGAGACGCAGTTGTCAGAGTTGAAGTGTGAACCCTCCGTGGGCATGGAAAAGTTGCTAGGAGCGTTGCATGGATCGCCACTTCTCGGGCGATTGCCGAGAGTCCAATCCAGCGCCAGCACAGACTCCGCCGTGCATTCTATGTATACTCATAGTGTATACAGCAGTCCCTCGGCCAGTCCCCGCGCGTCCCGGCACTACACGCCGTCGCTGTCCCGCAACAACAGCGACGCGTCCCACTCGTCCTGCTACTCGTATAGCTCGGAGTTCTCGCCCACTCACTCACCTGTACAGGGGCGACACCCTCACGTGGTGTACCGGGACGTAGCAGCGCCGGTGTTTCCGGCGTCGCCCGCGCACGACGAGGACGCGGAGACGGCCGACGACCGCCTGCACCACCACCAGGGCATCAGCCGGCAGCAGCTCATCAACAGCCCATGTCCCATATGCGGGGACAAGATCAGCGGCTTCCACTACGGCATATTCTCCTGCGAGTCCTGCAAAGGCTTCTTCAAGCGCACGGTCCAGAACCGAAAAAACTACATGTGCCTTCGAGGGGGCAACTGTCCGGTGACAGTCGCCACGAGGAAGAAGTGTCCGGCGTGTCGGTTCGACAAGTGCTTGGGATGCGGGATGAAGCTTGAAGCTATACGCGAGGACAGGACGCGCGGCGGCCGGTCCACGTACCAGTGCTCGTACTCGCTGTCGGGCGCCGCCTCCACGGGCTCGCTGCTGTCGGCGCACGTGCCCACCACCCTGCGGCACGCCTCCAGCCTCACTTGTGTAAATGGCCCTGGGTCATACAACAGTAGAGGGGAATCAAGTAACAGTCGACTAACGCCCGACATACCTCCGTTATTACAGGAAATAATGGAAGTGGAACACCTATGGCAGTACAACGAGTCCGAGCTGAACCGGCTAGGCAAGTCCCCGGGCAGTCCCTCCGCCAACCCGCTGCTCGCCGCCAGCGGTATCACGGCGCAGAACTCCAGCCCAGACTTCCTGGCGGACCTGTGCAATATCGCCGACCATCGCCTCTACAAGATAGTCAAGTGGTGTAAGAGCTTGCCGCTCTTTAAGAACATTTCGATCGACGACCAGATCTGCCTGCTGATCAACAGCTGGTGCGAGCTGCTGGTGCTGTCGTGCTGCTACCGCGGCGTCAGCACGCCCGGCGAGGTCCGGGTGGGCGGCGGGAGGGGCATCACTCTCGACCAGAGCGCCAAGCTGGGCTTGACGCCGTGTATAGAGCGCATGCTGAGCTTCACCGACCACTTGAGAAGACTACGAGTAGACCGATACGAATATGTTGCGCTGAAGGTCATCGTTCTTCTCACATCAGACACGCCTGAACTACGCGAATCAGAGAAAGTCCGAGCGTCGCAAGAGAAAGCGCTGGCGGCGCTGCAAGCGTACACTGCCACGCACTCGCCCGACACGCCCGCCAAGTTCGGGGAGCTGCTCCTGCGCATACCGGAGTTACAGCGGACTTGCCAATTCTTCATGCAAGTCGGCAAAGAGATGCTCAACCCAGCGAATAAGAGTAAGGACGGCGAGGGGCCAAGCTTCAACCTCCTCATGGAACTCCTCAGGGGCGACCATTGA
Protein Sequence
MSGPETNNVKFSYSSSGVRISVSSEPHDEDSTDAEISKIDFTQHQNEVNMRNKKKRPSSGAQCEPQSNDRERPMSWEGELSDSEMVIDTSVNNDENSSSLDLQSSRDSIDTLRNVTIKTEPIKTEAFQSLDDQRVLDLKYPAALQSHQRSLSMNRISVLTDNTSLSLVRRPSSPTSSAKSLVLDQNTMPIMPQTSLGEVQNLTIKKETQLSELKCEPSVGMEKLLGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVVYRDVAAPVFPASPAHDEDAETADDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYSLSGAASTGSLLSAHVPTTLRHASSLTCVNGPGSYNSRGESSNSRLTPDIPPLLQEIMEVEHLWQYNESELNRLGKSPGSPSANPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLDQSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDTPELRESEKVRASQEKALAALQAYTATHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKSKDGEGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00961038;
90% Identity
iTF_00806824;
80% Identity
iTF_00347558;