Cmed010050.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr30:7612457-7621618[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00027 0.71 9.3 0.0 29 58 319 348 306 354 0.85 2 3 0.00033 0.87 9.1 0.0 31 58 357 384 350 392 0.86 3 3 0.00039 1 8.8 0.0 31 58 393 420 387 425 0.86
Sequence Information
- Coding Sequence
- ATGGCACAATATCAACAATTAAACTCTCCAGAGTACAATGAATTAATGGCGAAACCGAGCAGTTCACGTTATCAAGATGTGTGCATATGTTGTTTGTCGCAAAACGTTCCTCTCGTCATTCTGACGACTTGTAAACTTTGGGTTTTTTTTGAGATTTTCGTCGAATTTAAGCCAGAATATGGAGCGTCATTTATCTGCCACCCATGCCATCATTTCTTAACAAAAATAGAAGCTTTCAAGACCCAAGTACTGGACAGTTTAAAAATATTTTATAAACAGGCGAGTTTCCTATTGGCAGCAGCTCTAAAGCCAGCAAATAAATTCAGAAACTTACAACTCTCAAAAACGGATATCGTAACCACAACTGATTTGAAGCAAGAATTTGACGAATCAAAATTTCTAACAACTACCAATTCGCACGAAGAGCAGTGTAAGGAAATTACCACAGATGTAAAAATCGAACACGAAAGTGGTTCCGATTTCGAAATTGAGATTCCTTTGTCTGATATTAAAAAGGAAATTAATAAAAAAATAAAGGGACCCCATGTATGTGAAATATGCAAATCTGTACTTAACACACCATTTTCCTTCAAGGAACACATAAAAAGACATACAAGGAGATACGAATGCCAGGCGTGTGGGATAAGGAAGAACAACGTGTACTCTGTGGCGAAACACTACAACGACGAGCATGGCGTCATCGACATGCAGTTCGTCTGCCAGATCTGCGGCTTCACCACCGACCGGCACCGCGTGCTCCGCTACCACCGCGACAAGCACAAGCAGAAGCAACAGTGTTCTCTCTGCGCGAGCGCCTTCGTCAACAGCAACGGGCTGCGCGTGCACATGCTCACCGTCCACAAGCTATCCAACCGCGTATACTCATGCGATGTGTGCGGCGCAGCGTACAAGGCCAAGTCCGGGCTCGCGGCGCACGCGGCGAGTGCGCACGCGCCGCGGACACCCGCCGCCTACTGCGCGCCCTGCCGCACGCACTTCCGCACGCGGTACAACCTGCAACACCATCTCAGGACGCACTCCAGCCACGTGACGAACCAGGACAAGAATGTTATGGCCGCCTACTGCGCGCCCTGCCGCACGCACTTCCGCACGCGGTACAACCTGCAACACCATCTCAGGACGCACTCCAACCACGTGACGAACCAGGACAAGAATGTTATGGCCGCCTACTGCGCGCCCTGCCGCACGCACTTCCGCACGCGGTACAACCTGCAACACCACCTCAGGACGCACTCCAACCACGTGTCGAACCAGGACAAGAA
- Protein Sequence
- MAQYQQLNSPEYNELMAKPSSSRYQDVCICCLSQNVPLVILTTCKLWVFFEIFVEFKPEYGASFICHPCHHFLTKIEAFKTQVLDSLKIFYKQASFLLAAALKPANKFRNLQLSKTDIVTTTDLKQEFDESKFLTTTNSHEEQCKEITTDVKIEHESGSDFEIEIPLSDIKKEINKKIKGPHVCEICKSVLNTPFSFKEHIKRHTRRYECQACGIRKNNVYSVAKHYNDEHGVIDMQFVCQICGFTTDRHRVLRYHRDKHKQKQQCSLCASAFVNSNGLRVHMLTVHKLSNRVYSCDVCGAAYKAKSGLAAHAASAHAPRTPAAYCAPCRTHFRTRYNLQHHLRTHSSHVTNQDKNVMAAYCAPCRTHFRTRYNLQHHLRTHSNHVTNQDKNVMAAYCAPCRTHFRTRYNLQHHLRTHSNHVSNQDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00347780;
- 90% Identity
- iTF_00347780;
- 80% Identity
- iTF_00347780;