Basic Information

Insect: Cnaphalocrocis medinalis
Gene Symbol: lrrfip2
Assembly: GCA_014851415.1
Location: Chr7:833765-881692[+]

Transcription Factor Domain

TF Family: LRRFIP
Domain: LRRFIP domain
PFAM: PF09738
TF Group: Unclassified Structure
Description: LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1e-54 1.6e-50 171.9 14.5 1 173 27 192 27 194 0.89

2 5 7.9e-13 1.3e-08 34.4 0.4 202 268 273 339 265 358 0.82

3 5 0.0067 1.1e+02 1.8 5.5 1 53 359 412 359 459 0.75

4 5 0.3 4.7e+03 -3.6 0.3 213 254 953 995 947 1018 0.62

5 5 1 1.6e+04 -7.5 9.3 42 84 1122 1162 1100 1184 0.38

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1e-54	1.6e-50	171.9	14.5	1	173	27	192	27	194	0.89
2	5	7.9e-13	1.3e-08	34.4	0.4	202	268	273	339	265	358	0.82
3	5	0.0067	1.1e+02	1.8	5.5	1	53	359	412	359	459	0.75
4	5	0.3	4.7e+03	-3.6	0.3	213	254	953	995	947	1018	0.62
5	5	1	1.6e+04	-7.5	9.3	42	84	1122	1162	1100	1184	0.38

Sequence Information

Coding Sequence: ATGGACCCGTCCCGGCGTCAGCGGACGCAGACCAAGGCCACAGCGGAGGAGCAGGCCCTTGACCAAATTGCCAGAGAGGCGGAACAGCGGCTGGCAGCGCGGCGGGCCGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGAACAATGCCGACAAGGCCTACGACATGTACTCAGAGAGCGTGGGGCGGCGCGGCGGGTCGCGGCTGGCGGCGCTCAGCCCGGGCGGCGTGCACTCGCCGCGGCGGAGCTCCGAGGACTCCGCCGACGACGCCTTCAACGTTAAGGATCTCAGGCACGAGTTGAAGGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCCGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCAGGAGGAGCACGTGCAACTTACGCGTGAACACAAAGAGAAGTGCTCGCGCACGAGCGGCTGCGGCGCGAGCACGCGAGCCTGGAGCAGGAGGTGTGGCGCGGCGCGGGACGCCGTGCGCGCGCGGGACGCCGCCGGCCGCCGCCGGCCGGCCAGGCCTTCGCCGACGCCGCGCCCGGCGCCGACGTGCCTGGCTTCGGGCGCCGGTGCCGCCGCTCGCGCTCGTGTCGCTGCAGCACGACCGCCTGCTCGGCGACCGCGCCGAGGGCAACCCTGGTACGGTACCGCGCTCCCGGGCGCTCCGCCCCGGCCGGCCTTCGCCGACGCCGCGCCCGGCGCCGACGTGCCGGGCTTCGGCGCCGTGCCGCCGCTCGCGCTCGTGTCGCTGCAGCACGACCGCCTGCTCGGCGACCGCGCCGAGGGCACCCTGGACGTGCGGTTGCAGAAGCTGCTGAGCGCGAAGGCGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGACGAGCGCGCGGCGCGGCAGAACGGCGTCGCCAGCCACCACGACCACGACCTGGAGACCGAGCTGGAGAGCCTGCGGCGCGGCGTGTCGGAGGCGAAGGCCCGCGCGGCGAGGGCGGAGGCCGAGGCGGCGCTGCAGGCCGCCGCCGCCGCGCGCCTGGACGCGCAGGTGGCTCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGGCGCTCAAGCAGGAGCGCCGGCGGCTGCAGCGCGAGAAAACTATGGAAGATGGTAATATTACCAATACGAAAGACGATAAAATCGCGGCATTGGCTAACTTGTACAGCGAAAGGACGGTGAAACTAGCGACGAACGGGCATGATATAGGCGGGGAATCATCGAGCCCGCCCGTAGAAGCGCACGAACCGCGCCGCCTCAGCGCCGACGCGCCTAAGGACGACAAATTCCGCAAGAGAATCAACCCGCTGCGGATACACCTCGGCAAGAGACCGTTCGTCGATAATTCCATCCAGTATTACAATCCTGGCAAGAAGAAGAAACCTTATGTCATCAAAAACAGTGAAACCAGTGCCCCTAACACTGTGCCCAGAGTACCTAAACTAATCCCTAAGAGAGTTGATGCTACTTCCTTTCACAATGCTCCACAACAAATGGGCAGTGCCTTGTTGGACAATGAAGAAGACAAACCTGTGCCGAGGCTTGTCCCTAAAAGTCAACTATTGCAGTATAAAAAGGAGCCCTCACCTGTGAAAATTGAACCTATAAGTACACCAGTAGAAAAAGAGTGTGGTATCAAATTAAAATTAAGCTTAAACAAAGCTAATTCACCTGTCATTATCAATTCAACTGTGGATCCTACTATTGGTCAACAGAATTTACATGTTCACAAACCTCCCAGTAGAATGCGAAGACCTCCTAAACGGTATGAAAAAGAAGCACCACAGGAACCACTACCAGTTCAACCAAAACTTCCTTCAATCAAAATGACCATTTGTGATAAAGCTGACAGTCCTTTTGTGAAATCAACCATATTTGAAGATAACAAGGAGACCACATTGAAATCCCTTCTGAATAATAATCTATGTATGAAAGTAAAAACTCCAGAATATAAATCAGAAAGCACTATCAAAACTACCATATATGATAATAATATAGAAGATGTGAATACATTAAACAGGGTACCAAAATTGACTGTAAGAGTTCCTAAAGAACTTTTGGATAAAGATTCATCCAGTGATTATTCATCAGATAGTGATGTAAGTGATAAATTAACAGTTGATGAAAATAATATAACAATAGACGAAGAAAATAAAACCCAGCCAGAAATAAAGCCTCAGCCTCCAGAGATAGAACAGCCCATGGAAGAGGTAAAAGACGAGTTACATGTTGATGTGGAGGAAAAAATAGAAACCCCGGAAGATCTTATTGCCAAAACCGAATCTAAGACTGAACCAGTAGACCAAGCAAATAATGAGGATACCTTAATTGAACCCAAAATTGAGGAACCAGAAATACCTGTGACAGAATTATCATTAGATAAGCCTCTTGACAAATATCCCTTAAAAGATCTATTAAAAGTGTTTTTGGGAAATACAGCATATAACTGCATTTACTGCAACCATGTCCGCAAGATAGCAGTAAACTTTTGCCTAAAAGTTCACAGAAGATTTCACTCTGGAGAGTACCCTCATGAGTGTAAAGAGGAAGGTTGTACTGAAAAGTTTGTCTCAAAGAAACTTCTTGCAAAACATATTGATGAACACAGGAAGAAGTTGATTACAGAAGAGTTAGGTGGAGAAAAAGTATCTCCATCAGAAGACAAAACACAAGAAGTACCCAAAGAGATTCCAGTAATTGATTTAGTTGATGACAAACCAAAAGAGGAAGCAGGTACTTCTGAAGTAAAGGCTGAGGCAGGAACTGAGCTGTTATCAAAGAAGTCTAAGAAAAAGAAATCAAAGGAAAAAGATGCTCTACTACTAGATGTCAATTTGCCAGCTCTGGATCTCTCGGAAAGTGACAGTAGTGATGAATCTGATAGTGGACTGCCACCACCTAAAAAGGAAGAGGTAGACTGTGAAAATAAAAAAGACGACATAGCTATCACAGATACTGACGGAAATATAGCAGAGGGTGTTCTTCCTAAAGTGGAAGAAAAATCAGAGCCTGTAGAAGACGCACCAAGTGAACAGCAAGTTCTAGATATTTGGGACAATTTCAAGAAGTATCAAGCAAAAGTTGAAAAACAAAAAGAAAAGACACCACCATTAGTTCCAATTAGGAAACATGTGTGTGAGTCTGATCATGACTATTGCTTAATTCCAACGGATTTAAACGGAGATGAGGACACATTTAGTATAGATAAAAAGAAAAACAAGAAATCGCCAAAGAAAAGACATGGTGGCTTGTCATCTTCCAGTAGTAGCAGCAGTGATAGTGATTCTAGTTGTTCTTGTGGCTCTAACTGCAGTTGCTCGTCCAGCAGCGGTTCGTCATCATCCAGCTCATCAGATTCAGATTCTTCTGATGATTCATTGAATGAAAAGAAAGGTCCTAACGATAAGAAAAAGAAGAAACAGCAAAAGAAACTTCCTAATAGAAGAATAAGTAATGGATCCAATGTGGATGTGATGGGGATGTCTGAAACACCTATATTAATCCCAGAAAAAGTAGAACCTCCTATTGCTGAAACGGATTTGGAAACTACTGAAAGTGAAACTGATGAAGAATTTTATGATAAGCATCCGCAGCAAATAGCAAATAAACTACATGCCGAAAAACGCAATCAGTTAATGTTACTTGCGTCTGTAGCACCATCTGATGGGGGATCTGTTTCTGGTGAGGCTAGTCGGCCTAATACTCCTATCAAAGACGAAGAACCTAAAGTAGCAGTTGAAGAGAAAGAAAAACCAACTAGCACAAAAAAGAAAAGTAAAAAGAAGAAGAAATCCAAGAGTTCAAAAAGACATGGTCCTATTAAACTTAACATTCCTAAAGATATTATAGCTAAGTCTGAACCAGAACCACCCCAACCACTACTTCCCAACAAAATTACGATATCCTTACATTCTAACACAGTTCAAATACCAGAAACTCCTCCCGCGCCATTAGTCGCCACCAGCACTAGTGCGACAACGACATCTGTGGAACATAAAAGAGCTTCAAAGAGACGTCGCGTTCGAAATAAATTTTATGGATATTCTAGCGACGAGGAGACACCTACTACACCCACTGTAGCGGCTTTAAAACCACAACAGCCACCAAAGCTTGAATGGAGAAAGGAAGATTTGCCATCGCCTGTCACGCATAAGCCGAAAAAAGAAGTACCATCTACAATAATACCTCAGAGACTTTTCAATTATACTGAGCCAATTAGGTTAACTACGCCGATTCCGGATCCCGAACCGCCTCGTATTCTAATGAACTCTGAATCTATGGAGTCAAGTGACTCTGACTCCAGTGAGGGCAACTTAGAGATCTATCAGCCTCGTAATCCGCCAAGCGCTCCACCGATTCCGCCCCCGACTTATTTGAATTCGGGGACTTCGAGTTTACCATATGCCTTCCAAAGACCCGCTGTGCGGCAAGCTCGAGAAGGCGAGAGCGTCTACTGCTACTGCCGCTGCCCGTACGACGAAGTGTCCGAGATGATCGCTTGCGACGCAGAGGGGTGTCCTATCGAATGGTTTCACTTTGAATGTGTTGGTATCATGGTCCCACCTAAGGGGAAATGGTACTGCCCTGAGTGTAGGAAAAATCAAAGTTTCTCAGGTTACAGATAA
Protein Sequence: MDPSRRQRTQTKATAEEQALDQIAREAEQRLAARRAARAEAREIRMRELERQQREQENNADKAYDMYSESVGRRGGSRLAALSPGGVHSPRRSSEDSADDAFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEHVQLTREHKEKCSRTSGCGASTRAWSRRCGAARDAVRARDAAGRRRPARPSPTPRPAPTCLASGAGAAARARVAAARPPARRPRRGQPWYGTALPGAPPRPAFADAAPGADVPGFGAVPPLALVSLQHDRLLGDRAEGTLDVRLQKLLSAKAALESEVRKLKLQLNDERAARQNGVASHHDHDLETELESLRRGVSEAKARAARAEAEAALQAAAAARLDAQVARLRARQDHQDEHEEALKQERRRLQREKTMEDGNITNTKDDKIAALANLYSERTVKLATNGHDIGGESSSPPVEAHEPRRLSADAPKDDKFRKRINPLRIHLGKRPFVDNSIQYYNPGKKKKPYVIKNSETSAPNTVPRVPKLIPKRVDATSFHNAPQQMGSALLDNEEDKPVPRLVPKSQLLQYKKEPSPVKIEPISTPVEKECGIKLKLSLNKANSPVIINSTVDPTIGQQNLHVHKPPSRMRRPPKRYEKEAPQEPLPVQPKLPSIKMTICDKADSPFVKSTIFEDNKETTLKSLLNNNLCMKVKTPEYKSESTIKTTIYDNNIEDVNTLNRVPKLTVRVPKELLDKDSSSDYSSDSDVSDKLTVDENNITIDEENKTQPEIKPQPPEIEQPMEEVKDELHVDVEEKIETPEDLIAKTESKTEPVDQANNEDTLIEPKIEEPEIPVTELSLDKPLDKYPLKDLLKVFLGNTAYNCIYCNHVRKIAVNFCLKVHRRFHSGEYPHECKEEGCTEKFVSKKLLAKHIDEHRKKLITEELGGEKVSPSEDKTQEVPKEIPVIDLVDDKPKEEAGTSEVKAEAGTELLSKKSKKKKSKEKDALLLDVNLPALDLSESDSSDESDSGLPPPKKEEVDCENKKDDIAITDTDGNIAEGVLPKVEEKSEPVEDAPSEQQVLDIWDNFKKYQAKVEKQKEKTPPLVPIRKHVCESDHDYCLIPTDLNGDEDTFSIDKKKNKKSPKKRHGGLSSSSSSSSDSDSSCSCGSNCSCSSSSGSSSSSSSDSDSSDDSLNEKKGPNDKKKKKQQKKLPNRRISNGSNVDVMGMSETPILIPEKVEPPIAETDLETTESETDEEFYDKHPQQIANKLHAEKRNQLMLLASVAPSDGGSVSGEASRPNTPIKDEEPKVAVEEKEKPTSTKKKSKKKKKSKSSKRHGPIKLNIPKDIIAKSEPEPPQPLLPNKITISLHSNTVQIPETPPAPLVATSTSATTTSVEHKRASKRRRVRNKFYGYSSDEETPTTPTVAALKPQQPPKLEWRKEDLPSPVTHKPKKEVPSTIIPQRLFNYTEPIRLTTPIPDPEPPRILMNSESMESSDSDSSEGNLEIYQPRNPPSAPPIPPPTYLNSGTSSLPYAFQRPAVRQAREGESVYCYCRCPYDEVSEMIACDAEGCPIEWFHFECVGIMVPPKGKWYCPECRKNQSFSGYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -