Cmed124860.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- Rel
- Assembly
- GCA_014851415.1
- Location
- Chr8:5622799-5650565[-]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.9e-35 4.1e-31 108.0 0.3 1 168 54 223 54 224 0.85 2 3 0.92 4.8e+03 -2.8 0.0 122 148 464 490 454 512 0.73 3 3 1.6 8.5e+03 -3.6 0.1 119 152 526 559 518 566 0.64
Sequence Information
- Coding Sequence
- ATGTCTGATACGGAAGGCTCGAACATGGCTTCGCCGCAGTCGGTAATGGACTCGCCGTACAGCTCTCCTTCGCAGCAAGTTCCTCAGCTCGCGTTCTCAATGAAAGAGCTAAGATGCGCGGATAATAAATTCATGCACCCGGAAAAAAGTAAATGTTTTCTAAGAATAGTAGAGCAGCCACAAGACCATTTCCGTTTTCGCTACAGAAGCGAAATGGTTGGCACACATGGCTGTTTACTCGGGGAATCATATGGAACAAGCAAAACTAAGACACATCCAACTGTTGAGTTGGTTAACTACCCAGGGAAAGCCATCATACGGTGTCGTCTGGCTCAAGACAAGAACCCGGAGGAACACCCTCACAAGTTACTTGAAGAAGAACAAGATAGGGATGTCAGTTATGAGGTGCCAGAACATGGAAGCTACAAAGTTGGGTTTGCTGGTATGGGGATCATTCACACTGCCAAGAAAGATGTCCCGGCATTGCTTTTGAAAAAATATACTGAAAAGTATAAGAACGCACAAGTAAATCTAAAAGATCTGCGCGTACACTGCGAGAACGAAGCGAGGGGCATAAACCTCAACATCGTGCGCCTGCGCTTCAGCGCCCATGACGTCATGACGGACAAGGAGATCTGCGAGCCGGTTTTCTCCAAACCGATACACAACATGAAAAGCGCCGCCACGAACGATTTGAAGATATGTAGGATAGACCGGAGTTGCGGCCGGGCGAGCGGCGGCGAAGACGTTTTTCTACTAGTGGAGAAAGTCAATAAAAAAAATATAATGGTCCGTTTGTTCGAGTTGAATGAGGCCGGCGAAGAAACCTGGCAGGCCACGGGGCACTTCCTACAGAGTGACGTGCATCATCAATACGCCATTGTGTTCAGGACTCCCCCGTACCAAGACCCGAACACAAGCGTGGACAAAAAAGTTTTTATCGAGCTGGTTCGCCCGTCGGACGGACGGACAAGCGAGCCGAAAGAGTTCAAATACAAAGCCTCGCCGTCTTTCAGAGGCTTGGGGAAGAGGAAGAAGAGCAACTCAACATACTCCTCTCTCAGTTCCTCTGATGGGGGTTCACTTAGAAGCAACGGTGATGTGCCTGCCACTGTATTGTACATGAAAATGGATCCTCACAGCAATGATAATACGGAAGAACTGACCAATGACGTGCAAATGTGCACGATACCTCAGATCCCAGTAATCCCGCAAGGGTCGCCGAGTAGCTCGAGCGACCTCGGCGAGGCGATCCTGTACGGCATGAGGGCGGAGGGCAGCTCCGACACCTATAGATACGAGAGCCCCATGCTGCCGCAAGGGGTGTCGGACCCGCCGGACCTGCAGCTGAACTCGGCAGAGTTCCAACGGATCCTTCGCGATAACCTCAGTCTGCCGCCCGACGAGACGGAGCAGATCACGCGCGTCGACCTCTCCGAGTACATGCTGTCCTTCTCCGAGAGCCTGCACAGCTTGCCCGGCGAGAATAACTCTTCGCATGGAATGGAATTCATCCGATCTATGTTGGTCTCCGATTCCGGCCGAGGAAATAAATCCAAGGAACCCGCTTCGACAAGCCGACAACAAAGCAACACTAATGAGGACAAAAAAGTCAACGAAATTGACAAAACTAAAGGAACCACCGAATACTCCGCTTTCTACAAAGCGGAAGATGGAACTGAAGTGAAGAAGCTAGTTAAGGAGTTATGCGAGATGATGAGGGACAGAACTGGTGTAAAGAAACAAATTGTCAGAGCCAAGCTTGAGAGACTGTTCGAGATGCGGCTGTCTAACGGGGACACGTTTCTTCATATGACATTATGCAGCAAACAGCCAAGTCTCGATTATATTGTTAAGCTTATTCATAGTATGAAAATGACGCATTTGCTTAATTTGACGAATAACCTGTCGCAAACGATATTCCATTTGGCTGTGGTTTACGATATGCCGAAAATCGTTGCTTTCCTCGCCTCAAAGGGTTGCAACCCAATGATTGAAGACGTGGAAGGCAACAACGTGATCCACTACGCCGTGCTGTACCAGGCGTGCCTGGAGCCGCTGCTGGAGGCGCTCAAGGCCAACAATGTCTCGTACGATTTGAACGCCTTCAATAATGAGAAGCAAACAGCACTCCACTTGGCTGTAATATGTAAGAGCGTTCACAGTACGAAGACTTTATTGGATAACGGCGCCAGCTACAACGCGCGCGACAGCGAGGGCCGCACGCCGCTGCACCTCGCCGCCTACGACGACTGCCTCCACGCGCTCGCCGAGTTACTGCGCCGCGCGAGCCCGAGTGAGATCGACGCTACCGATGGTCGTGGGTACACGGCTTTGCAAATAGTTTGCGATGGGGGAATCAGAGAGAATACACTCAAAATGGTGGAAATGCTGCTTGATAAAGAGGCGGACCCGCTGCGGTGCGAGCAGCACAGCCGCAGCGCGTGGCAGCTGGCGCGCGACTGGCCCGCCGTGCGCGACGTCATGCGCGCGCGCCGGCCCGCGCTGCAGCCCGACGACGACGTCAAGTCCGAGCCCGAGGACGACTTCGAGTCCGCCGACGAGGGCGAGGGCTTCCCCGCGGACTACGGGCTGGGCGCGCTGGGCGCGTACGCGCGGGAGGCGGCGGCGGCGCTGGACGCGTCGGGCGGCTGGCGCGCGCTGGCGCGGCGGCTCGGGCTGGCGGGGCTCGCGCACTGGTTCGCGCACACGCCCAGCCCCGCGCGCACGCTGCTCAACCACGTCAAGGAGTGTGGAGAAGAGATAACCTCTAAGGATTTAGCGTTGGCACTCGATCAAATCGGGGAAACGGAGGCAGCAAACATTATACGTAAATATATCGAATAG
- Protein Sequence
- MSDTEGSNMASPQSVMDSPYSSPSQQVPQLAFSMKELRCADNKFMHPEKSKCFLRIVEQPQDHFRFRYRSEMVGTHGCLLGESYGTSKTKTHPTVELVNYPGKAIIRCRLAQDKNPEEHPHKLLEEEQDRDVSYEVPEHGSYKVGFAGMGIIHTAKKDVPALLLKKYTEKYKNAQVNLKDLRVHCENEARGINLNIVRLRFSAHDVMTDKEICEPVFSKPIHNMKSAATNDLKICRIDRSCGRASGGEDVFLLVEKVNKKNIMVRLFELNEAGEETWQATGHFLQSDVHHQYAIVFRTPPYQDPNTSVDKKVFIELVRPSDGRTSEPKEFKYKASPSFRGLGKRKKSNSTYSSLSSSDGGSLRSNGDVPATVLYMKMDPHSNDNTEELTNDVQMCTIPQIPVIPQGSPSSSSDLGEAILYGMRAEGSSDTYRYESPMLPQGVSDPPDLQLNSAEFQRILRDNLSLPPDETEQITRVDLSEYMLSFSESLHSLPGENNSSHGMEFIRSMLVSDSGRGNKSKEPASTSRQQSNTNEDKKVNEIDKTKGTTEYSAFYKAEDGTEVKKLVKELCEMMRDRTGVKKQIVRAKLERLFEMRLSNGDTFLHMTLCSKQPSLDYIVKLIHSMKMTHLLNLTNNLSQTIFHLAVVYDMPKIVAFLASKGCNPMIEDVEGNNVIHYAVLYQACLEPLLEALKANNVSYDLNAFNNEKQTALHLAVICKSVHSTKTLLDNGASYNARDSEGRTPLHLAAYDDCLHALAELLRRASPSEIDATDGRGYTALQIVCDGGIRENTLKMVEMLLDKEADPLRCEQHSRSAWQLARDWPAVRDVMRARRPALQPDDDVKSEPEDDFESADEGEGFPADYGLGALGAYAREAAAALDASGGWRALARRLGLAGLAHWFAHTPSPARTLLNHVKECGEEITSKDLALALDQIGETEAANIIRKYIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -