Cmed039510.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- Rfx2
- Assembly
- GCA_014851415.1
- Location
- Chr9:15047262-15054170[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-31 1.7e-27 95.7 0.3 16 78 12 74 8 75 0.96 2 3 6.5e-22 5.2e-18 65.3 0.3 38 78 104 144 99 145 0.94 3 3 1.2 9.2e+03 -2.8 0.0 24 33 609 618 597 625 0.70
Sequence Information
- Coding Sequence
- ATGGACGTATCTGAAGGCGGTATGGGCGGGTCCGCAGGCGTGTCGCTGCCGCGCTCCACGCTGTACACGCACTACCTGCGCCACTGCTCCGCGCACCGCCTGGACCCCGTCAACGCCGCCTCCTTCGGCAAGCTCATCCGCTCCGTCTTCATCGGGCTGCGGACCAGGCGGCTGGGGACCAGGGGCAACTCCAAGTACCACTACTACGGGATAAGGGCCAAGGCCAGCGCCAACGGGGACTCGCCGCCGATACACGATGCCATCGAAGACAAGACGGATGTTGAGCAGCAGATACCCTTCACTCGTCTACTGGAACCAGTCAACGCCGCCTCCTTCGGCAAGCTCATCCGCTCCGTCTTCATCGGGCTGCGGACCAGGCGGCTGGGGACCAGGGGCAACTCCAAGTACCACTACTACGGGATAAGGGCCAAGGCCAGCGCCAACGGGGACTCGCCGCCGATACACGATGCCATCGAAGACAAGACGGATGTTGAGCAGCAGTCAACGCCGCCTCCTTCGGCAAGCTCATCCGCTCCGTCTTCATCGGGCTGCGGACCAGGCGGCTGGGGACCAGGGGCAACTCCAAATACCCTTCACTCGTCTACTGGAACCAGTCAACGCCGCCTCCTTCGGCAAGCTCATCCGCTCCGTCTTCATCGGGCTCCGGACCAGGCGGCTGGGGACCAGGGGCAACTCCAAGTACCACTACTACGGGATAAGGGCCAAGGCCAGCGCCAACGGGGACTCGCCGCCGATACACGACTGCCATCGAAGACAAGACGGATGTTGAGCAGCAGGTCGCACGGCGTGGAGTTCCTGGAGGCGGTGAGCGCGCTGGACACGGGCGGCGTGGAGCGCGCGCGCCGCGCCTTCTGGCGGCGGCTGGGCGCGGGCACCGCCGCGGGGGGCACTGCCGCCGGGGGCAACGCCGCGGGGGGCGCCGTGCGCCGCCTCACCGCGCGCCGCGACGTGGCCGCGTGGCTGCGCCAGGCCGACCTGCGCCTGTACCAGCAGTGCGTGGAGCTGCTGCTGCCTGATGTGCTGCGGCCCATCCCGCCGCAGCTTACGCAGGCAATCCGCAACTTCGCCAAGAGCCTGGAGTCGGCGCTGGCGGCGGGCGCGGCCGGAGCCCCGAGCGTGGCCGCGCGCGCGCAGGCCTCCGCCGCCTCCGCCCTCGCCGGAGCCCTGCGCCGCTACACCTCGCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCACCAACCACCACCAGATACAGCAGGTGACCGCACACACCAGGCCTCCGCCCCCGCCCGCCGGAGCCCTGCGCCGCTACACCTCGCTCGACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCACCAACCACCACCAGATACAGCAGGTGACCGCACACACCAGGCCTCCGCCCCCGCCCGCCGGAGCCCTGCGCCGCTACACCTCGCTCGACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCACCAACCACCACCAGATACAGCAGGTGACCGCACACACCAGGCCTCCGCCCCCGCCCGCCGGAGCCCTGCGCCGCTACACCTCGCTCGACCACCTGGCGCAGGCCGCGCGCGCCGTGATGCTGTCGGACCTGAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCGGCCTGGGCGTGCAGTTGCGCCAGCGCCGCCACCGCGCACCGCCTCGAGGCTGACTTCAAGGTCACTGTTTACTCCTTTAGTCTTAAGCCGTTAGGTTTTTCTTCCATTGATAGATTTTACAGGAGCATACCGATTTGTTGGTCGGCGGCGTCGTTCGGGTCGTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCGCGTGGCGCAGCACGAGCGCGCGCCGCCCATCGCCGTCATGCACAGCCACGACCACCACGACTTGGACGAGGAGGAGGAGGTCCCCGCAAGCGCGGGCGGCGCCGAGGCGCGCGACTCGCCCGACGACGATGAGCAGGAGTGGGACTGGGAGGACGACGACGACGACGACGACGAGCCCATAGCCAAGAAGCTCAAGGTGCCCGACGACCAGTAG
- Protein Sequence
- MDVSEGGMGGSAGVSLPRSTLYTHYLRHCSAHRLDPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKASANGDSPPIHDAIEDKTDVEQQIPFTRLLEPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKASANGDSPPIHDAIEDKTDVEQQSTPPPSASSSAPSSSGCGPGGWGPGATPNTLHSSTGTSQRRLLRQAHPLRLHRAPDQAAGDQGQLQVPLLRDKGQGQRQRGLAADTRLPSKTRRMLSSRSHGVEFLEAVSALDTGGVERARRAFWRRLGAGTAAGGTAAGGNAAGGAVRRLTARRDVAAWLRQADLRLYQQCVELLLPDVLRPIPPQLTQAIRNFAKSLESALAAGAAGAPSVAARAQASAASALAGALRRYTSLNHLAQAARAVLTNHHQIQQVTAHTRPPPPPAGALRRYTSLDHLAQAARAVLTNHHQIQQVTAHTRPPPPPAGALRRYTSLDHLAQAARAVLTNHHQIQQVTAHTRPPPPPAGALRRYTSLDHLAQAARAVMLSDLNRVDFRVVREQAAWACSCASAATAHRLEADFKVTVYSFSLKPLGFSSIDRFYRSIPICWSAASFGSFHLIRLLYDEYVSYLIERRVAQHERAPPIAVMHSHDHHDLDEEEEVPASAGGAEARDSPDDDEQEWDWEDDDDDDDEPIAKKLKVPDDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -