Cmar007159.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- Trl
- Assembly
- GCA_900005825.1
- Location
- CVRI01000021.1:1576337-1581109[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2 8.2e+03 -2.7 0.0 20 27 261 268 259 274 0.81 2 2 4.2e-26 3e-22 78.7 3.3 13 51 284 322 271 324 0.93
Sequence Information
- Coding Sequence
- ATGTCTCTTCCTGTTAATTCACTGTATAGTTTGACTTGGGGCGACTACGGAACATCGTTAGTGTCTGCAGTTCAGCTTCTACGATGTCATGGAGACTTAGTAGATGTTACACTAGCAGCCGAAGGCCGTTCATTCGAAGCACATAAAATTGTATTGTGCGCTGCCAGCCCATAtcttttgaatcttttaaaaAATACAACATGCAAGCATCCAATTGTAATGTTGGCCGGTGTTTCGGCGAGCGATTTGGAAGCTCTCTTGGAGTTTGTTTATCGTGGCGAGGTCAGCGTTGATCATTCTCAATTACCATCTCTTTTACAAGCAGCACAATGCTTGAACATTCAAGGATTAGCACCTCAAACTGTCACTCACAAGGATGACACAGCCTATACGTCGATCCAAATCCATCCAGGTCTGGTACACCAGGATGTCAAAACTCATATTCTCGAAGTAGGTGACAATATGGGCGAAGAATTGATCATGCAACAACCACAACAAATTCAAACTCACCATCAAATTGTCGAAGAAATTCTCCCAGAGCAAATGAGCGATGAAGTCACAAAGGAAGTTATCAATCAATTCTTACCACAACGCAAACGTAAACCGAGAGTCCCAAAAACCCCAAACAAGCAGAACCCAGCAAAAGTCGTCAAATTGGAACCGCAAGCATCTGGATCGGAAACTATCACAACAATCACTAATGTTGAACCAACCACTGAAGAAATGATCGTTGAAAATAAGGAACAGGTTACGGAAATCGTTGAACAAATGGGAGAAGAACAAGTTGAACAACCATCAACTGGTGAAGTTAAGGTCAAAGTAGAAGGAAAGCCATCGAAAGACAAGTCAAGCaagCCAAAATCAAAATCACAATCGGAACAACCAGCGACATGTCCAATCTGTTCAGCTACCATTCGGCAATCACGCAACTTGAGGCGACATTTGGAATTGAGACATTTTAAGAAACGAACACCGAAAAAAATCAAGAAGGAAATGGCTGCTGCTGAACAACTTGCTAACACATCAACGGAAATCTTATCGGacaatggaaatggaaataaCACAATAACTGTCACTATGGAGCCAGGATCTGACCAGCAAACAATCACAGTCAATGGACAACAAACTGGGCAACACGTCTTGACAACTAATTCAGATGGATCACTTTCAATTTCTGGATTACCAGGTCATATCATCGGAAGTTTAGGAAATgCGACAATCATCCGAACTGAAGATGGACAACAAATTGAATCAGGACAATTGATAACAACTCATGAACCATCACTGAGGACTTCTACAGGTGAAGTTTATCGTGTTGGTACAACCGTTTATCATATAGAAGAACGCCGTAGTGACCAACCACGtttaaattaa
- Protein Sequence
- MSLPVNSLYSLTWGDYGTSLVSAVQLLRCHGDLVDVTLAAEGRSFEAHKIVLCAASPYLLNLLKNTTCKHPIVMLAGVSASDLEALLEFVYRGEVSVDHSQLPSLLQAAQCLNIQGLAPQTVTHKDDTAYTSIQIHPGLVHQDVKTHILEVGDNMGEELIMQQPQQIQTHHQIVEEILPEQMSDEVTKEVINQFLPQRKRKPRVPKTPNKQNPAKVVKLEPQASGSETITTITNVEPTTEEMIVENKEQVTEIVEQMGEEQVEQPSTGEVKVKVEGKPSKDKSSKPKSKSQSEQPATCPICSATIRQSRNLRRHLELRHFKKRTPKKIKKEMAAAEQLANTSTEILSDNGNGNNTITVTMEPGSDQQTITVNGQQTGQHVLTTNSDGSLSISGLPGHIIGSLGNATIIRTEDGQQIESGQLITTHEPSLRTSTGEVYRVGTTVYHIEERRSDQPRLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00346830; iTF_00319782; iTF_00320227; iTF_01250741; iTF_01250195; iTF_01249721; iTF_01249206; iTF_01352765; iTF_01353399; iTF_00199518; iTF_00199176; iTF_00321246; iTF_00320709;
- 90% Identity
- iTF_00346830;
- 80% Identity
- iTF_00346830;