Cmar019614.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000064.1:117226-119838[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0041 0.31 11.8 1.2 1 23 157 180 157 180 0.96 2 19 7.7 5.7e+02 1.6 0.6 1 23 187 210 187 210 0.89 3 19 0.29 22 6.0 0.0 3 23 220 241 218 241 0.92 4 19 0.0015 0.11 13.2 7.4 1 23 279 302 279 302 0.98 5 19 0.3 23 6.0 0.6 3 23 311 331 309 331 0.97 6 19 2.5 1.8e+02 3.1 0.1 3 21 344 362 342 365 0.85 7 19 0.00014 0.01 16.5 2.4 1 23 412 435 412 435 0.97 8 19 0.31 23 5.9 0.0 3 23 473 494 471 494 0.91 9 19 0.00021 0.016 15.9 1.6 2 19 517 534 516 535 0.96 10 19 0.019 1.4 9.7 0.4 2 23 556 577 555 577 0.96 11 19 0.075 5.6 7.9 2.0 2 23 585 606 584 606 0.97 12 19 0.0087 0.65 10.8 2.1 1 23 612 634 612 634 0.97 13 19 0.066 4.9 8.1 0.3 3 19 644 660 642 665 0.89 14 19 0.0012 0.09 13.5 0.0 1 23 671 694 671 694 0.97 15 19 0.00012 0.0089 16.7 6.4 1 23 702 724 702 724 0.97 16 19 9.5e-06 0.00071 20.1 0.7 1 23 730 752 730 752 0.98 17 19 0.00061 0.045 14.5 2.0 1 23 760 782 760 782 0.99 18 19 3.6e-06 0.00026 21.5 2.8 1 23 788 811 788 811 0.97 19 19 2.6e-05 0.0019 18.8 0.1 1 23 817 839 817 839 0.98
Sequence Information
- Coding Sequence
- ATGGATGAAAAATGTCGGCTCTGTCGTAAAGACGAGTTAGTCTTCTCTGagtcaatattttcttatcgttgtggaaatgaacaaatttcagagattataatgaaaatttgccCAATagttcaaattgaatttgatgatgGACTTCCAACAAGAATTTGTCAGCAATGTTTAACGATATTAATAAGTGCTTATGAGCTTCAGAAAACCAGTCTTGAAAGTGACAACTTTTATAGATTACACTATGGATCTCAAATCTTCCCTAATCTTGAAGtagaacaagaaaatttggaattaataaaaattgaggaTGTAAGAAGTTCTTCAGatgatttaaatgaagaaatgtcaGAATAttctgaagaaaattcttacgACTCtaaagcaagaagaaaatcgtatcaacaaaaattattatttaaaccTCGTCCAATTCAAGgacaaaaaggaaaacttgatAGTAAAACTATTTATGCTTGCAACTTTTGTAACACAAAATTAATGAGAAGGTCAAACATAAGTCGTCACATGTTGTCGTTACATGATCCTACAATGAAACCCTTTGCTTGTATTTATTGTCCATTTCGATTTGACGacgaagagaagaaaaaattacacGAACAACGAAATCATCTTCACGATGTTCCTTCAATCATATTTTGTAACATTTGTGGTGCAAGTGGAAGTTATCAAAGTGGAATTGATCAGCATATTCAAGACGATCATTGCTGTGAAAATGATTctacagaaaattttctagTCAAACGTCgaagtgaaaagtttcatcCACTTCCGTTATCAAATCAATTACCTTCATTGAAGTACGAAGATATCTGGTATAAGTGCAATTTCTGTCATAAAGCTTTGAAgcataagaaaaatatcttgcgacatataagaagaaaacatgatCCTGAAAATCTTCCATTTGGATGTAAACTTTGCATTGAAAGATTTGAGAATATCGAACAGttgaatgaacataaaaagaaacatgaaaaagatgacaaaattcctttaaatgttattttttgtGAGATTTGTGGAATAAGTGGCGATAACATGGAAGGAATGCAAAATCATAAAACTGACGACCACAGTTTAACTCttgttaaaataaacaaaagaatagAAGTTGAAAACTTACCAATTTGTGAACcgaataaaaaatcattttcaaaatttcatccACGAGTTGTACCAGGATTTGAGCATCTGAAATACGATGAAATTCCTTACATCTGTAACTTTTGTAACAAACAGTTGAAGCCACGAAAAAATCTCATCAGacatatgaaaagaaaacatgatCCAGATGAACTTCCATTTGCTTGTCGGTTTTGTGTCGAAAGATTCGTAACAATAATTGAATGTGGGaaacatgaaagttttcaCGATCATGAGCCTCGTATTTTATTCTGTGATATTTGTGGTGCAAGTGGAGACAATAAAATTGGAATGGAAAACCACATGACTGACGATCATCTGAAACGCAATCTCGAAAATTCTTTGCAgtcaaaacaaatttcagAATCGAATGAAAGTCTTAACAAATGTTCAAAGTGTGACGAAACATTCAGTACCAAATTTCAACTACGTAATCACGAATGGCTGATccatttgaaactttatcgTCAATTGAATAGCGAAGAAgtgaaacaagaaatgaaatgttgtgCTTGTGATGAAACATTTGCCACCGaaatttcacttcttcaaCACGCTAATATTCATCGAAAAGAATTTGGAAATGTTAAATGTTCACATTGTCCCACACCAATTAGGTCATTCGATAAATTCTTGAAGCATCTTCAATATCATATGAAGCCAAAGACTCACGAATGTACAAAATGCCGTAAAATCTTTCCATTTGATAGCAAAATGATTGAGCACATCAAATCACATCgaagaaagtttaatgacaAAGTGATTTGTCCGAAATGCCCAGGAAAAttcagaaataataaatttctagaGATTCACGACAAAATTAAACATTGCAATCAAACTCTTTTCATGTGTCCAATTTGTGCAAAGTCATTAAGTTCAGAATGGGCGCTTGACAATCACATCAGATATGTTCATAGCACAGAAGAccaaagaaaacataaatgcaaattttgtCCAAAAAAGTTTACTCACAAATCGAAACTGAATATTCACGAAGCAACGCACAGCACTGAACGACCTTTCATGTGTCAAATTTGCCCTGCACGTTTCAAACATAAAGATGGATTGGTTGTTCATATTCGACGACATGATGGAACTTTACctaagaattttaaatgtgaTCAATGTTCGATTAGATTTGTCGATCGACACCGTTTAGCACAACATCTTCTGACACATTCAGGAATTAAACCTCATCAATGTAATTATTGCGACCGTTCTTATACATCAAAAGGCGATTTAGTTAAACATCTTCAAAAGTCTCATATTGGAAATGCTGTTTATCGATGTGAAAAATGTCCGGAAGCTTTCCCAcgattaattcaattaagagAACATCTTCAAGTTCATTATGAAGaaactcaataa
- Protein Sequence
- MDEKCRLCRKDELVFSESIFSYRCGNEQISEIIMKICPIVQIEFDDGLPTRICQQCLTILISAYELQKTSLESDNFYRLHYGSQIFPNLEVEQENLELIKIEDVRSSSDDLNEEMSEYSEENSYDSKARRKSYQQKLLFKPRPIQGQKGKLDSKTIYACNFCNTKLMRRSNISRHMLSLHDPTMKPFACIYCPFRFDDEEKKKLHEQRNHLHDVPSIIFCNICGASGSYQSGIDQHIQDDHCCENDSTENFLVKRRSEKFHPLPLSNQLPSLKYEDIWYKCNFCHKALKHKKNILRHIRRKHDPENLPFGCKLCIERFENIEQLNEHKKKHEKDDKIPLNVIFCEICGISGDNMEGMQNHKTDDHSLTLVKINKRIEVENLPICEPNKKSFSKFHPRVVPGFEHLKYDEIPYICNFCNKQLKPRKNLIRHMKRKHDPDELPFACRFCVERFVTIIECGKHESFHDHEPRILFCDICGASGDNKIGMENHMTDDHLKRNLENSLQSKQISESNESLNKCSKCDETFSTKFQLRNHEWLIHLKLYRQLNSEEVKQEMKCCACDETFATEISLLQHANIHRKEFGNVKCSHCPTPIRSFDKFLKHLQYHMKPKTHECTKCRKIFPFDSKMIEHIKSHRRKFNDKVICPKCPGKFRNNKFLEIHDKIKHCNQTLFMCPICAKSLSSEWALDNHIRYVHSTEDQRKHKCKFCPKKFTHKSKLNIHEATHSTERPFMCQICPARFKHKDGLVVHIRRHDGTLPKNFKCDQCSIRFVDRHRLAQHLLTHSGIKPHQCNYCDRSYTSKGDLVKHLQKSHIGNAVYRCEKCPEAFPRLIQLREHLQVHYEETQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00346905;
- 90% Identity
- iTF_00346905;
- 80% Identity
- iTF_00346905;