Cmar019614.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000064.1:117226-119838[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.3 3.5e+03 -1.7 0.8 18 24 4 10 4 11 0.89 2 16 0.00041 1.1 9.6 0.9 14 43 154 180 149 181 0.84 3 16 0.007 19 5.6 0.3 5 43 209 241 208 242 0.79 4 16 4.7e-06 0.013 15.8 4.0 18 43 280 302 272 303 0.94 5 16 0.59 1.6e+03 -0.5 0.1 10 23 337 348 329 360 0.76 6 16 4.9e-08 0.00013 22.1 0.9 18 43 413 435 402 436 0.90 7 16 2.7 7.2e+03 -2.6 0.1 19 24 444 449 442 452 0.79 8 16 2.9 7.8e+03 -2.7 0.1 19 25 473 479 463 494 0.63 9 16 0.15 3.9e+02 1.4 0.1 13 29 512 528 507 538 0.80 10 16 8 2.1e+04 -4.5 0.5 15 26 553 564 549 566 0.77 11 16 0.14 3.8e+02 1.4 1.9 4 22 571 589 568 608 0.85 12 16 0.3 8e+02 0.4 2.3 8 40 604 632 597 637 0.71 13 16 0.33 8.7e+02 0.3 0.2 18 29 672 683 663 695 0.70 14 16 0.014 38 4.6 3.4 6 30 692 717 687 728 0.77 15 16 1.4 3.7e+03 -1.7 0.2 19 41 732 751 723 752 0.77 16 16 0.0027 7.1 7.0 0.7 18 43 789 811 785 812 0.88
Sequence Information
- Coding Sequence
- ATGGATGAAAAATGTCGGCTCTGTCGTAAAGACGAGTTAGTCTTCTCTGagtcaatattttcttatcgttgtggaaatgaacaaatttcagagattataatgaaaatttgccCAATagttcaaattgaatttgatgatgGACTTCCAACAAGAATTTGTCAGCAATGTTTAACGATATTAATAAGTGCTTATGAGCTTCAGAAAACCAGTCTTGAAAGTGACAACTTTTATAGATTACACTATGGATCTCAAATCTTCCCTAATCTTGAAGtagaacaagaaaatttggaattaataaaaattgaggaTGTAAGAAGTTCTTCAGatgatttaaatgaagaaatgtcaGAATAttctgaagaaaattcttacgACTCtaaagcaagaagaaaatcgtatcaacaaaaattattatttaaaccTCGTCCAATTCAAGgacaaaaaggaaaacttgatAGTAAAACTATTTATGCTTGCAACTTTTGTAACACAAAATTAATGAGAAGGTCAAACATAAGTCGTCACATGTTGTCGTTACATGATCCTACAATGAAACCCTTTGCTTGTATTTATTGTCCATTTCGATTTGACGacgaagagaagaaaaaattacacGAACAACGAAATCATCTTCACGATGTTCCTTCAATCATATTTTGTAACATTTGTGGTGCAAGTGGAAGTTATCAAAGTGGAATTGATCAGCATATTCAAGACGATCATTGCTGTGAAAATGATTctacagaaaattttctagTCAAACGTCgaagtgaaaagtttcatcCACTTCCGTTATCAAATCAATTACCTTCATTGAAGTACGAAGATATCTGGTATAAGTGCAATTTCTGTCATAAAGCTTTGAAgcataagaaaaatatcttgcgacatataagaagaaaacatgatCCTGAAAATCTTCCATTTGGATGTAAACTTTGCATTGAAAGATTTGAGAATATCGAACAGttgaatgaacataaaaagaaacatgaaaaagatgacaaaattcctttaaatgttattttttgtGAGATTTGTGGAATAAGTGGCGATAACATGGAAGGAATGCAAAATCATAAAACTGACGACCACAGTTTAACTCttgttaaaataaacaaaagaatagAAGTTGAAAACTTACCAATTTGTGAACcgaataaaaaatcattttcaaaatttcatccACGAGTTGTACCAGGATTTGAGCATCTGAAATACGATGAAATTCCTTACATCTGTAACTTTTGTAACAAACAGTTGAAGCCACGAAAAAATCTCATCAGacatatgaaaagaaaacatgatCCAGATGAACTTCCATTTGCTTGTCGGTTTTGTGTCGAAAGATTCGTAACAATAATTGAATGTGGGaaacatgaaagttttcaCGATCATGAGCCTCGTATTTTATTCTGTGATATTTGTGGTGCAAGTGGAGACAATAAAATTGGAATGGAAAACCACATGACTGACGATCATCTGAAACGCAATCTCGAAAATTCTTTGCAgtcaaaacaaatttcagAATCGAATGAAAGTCTTAACAAATGTTCAAAGTGTGACGAAACATTCAGTACCAAATTTCAACTACGTAATCACGAATGGCTGATccatttgaaactttatcgTCAATTGAATAGCGAAGAAgtgaaacaagaaatgaaatgttgtgCTTGTGATGAAACATTTGCCACCGaaatttcacttcttcaaCACGCTAATATTCATCGAAAAGAATTTGGAAATGTTAAATGTTCACATTGTCCCACACCAATTAGGTCATTCGATAAATTCTTGAAGCATCTTCAATATCATATGAAGCCAAAGACTCACGAATGTACAAAATGCCGTAAAATCTTTCCATTTGATAGCAAAATGATTGAGCACATCAAATCACATCgaagaaagtttaatgacaAAGTGATTTGTCCGAAATGCCCAGGAAAAttcagaaataataaatttctagaGATTCACGACAAAATTAAACATTGCAATCAAACTCTTTTCATGTGTCCAATTTGTGCAAAGTCATTAAGTTCAGAATGGGCGCTTGACAATCACATCAGATATGTTCATAGCACAGAAGAccaaagaaaacataaatgcaaattttgtCCAAAAAAGTTTACTCACAAATCGAAACTGAATATTCACGAAGCAACGCACAGCACTGAACGACCTTTCATGTGTCAAATTTGCCCTGCACGTTTCAAACATAAAGATGGATTGGTTGTTCATATTCGACGACATGATGGAACTTTACctaagaattttaaatgtgaTCAATGTTCGATTAGATTTGTCGATCGACACCGTTTAGCACAACATCTTCTGACACATTCAGGAATTAAACCTCATCAATGTAATTATTGCGACCGTTCTTATACATCAAAAGGCGATTTAGTTAAACATCTTCAAAAGTCTCATATTGGAAATGCTGTTTATCGATGTGAAAAATGTCCGGAAGCTTTCCCAcgattaattcaattaagagAACATCTTCAAGTTCATTATGAAGaaactcaataa
- Protein Sequence
- MDEKCRLCRKDELVFSESIFSYRCGNEQISEIIMKICPIVQIEFDDGLPTRICQQCLTILISAYELQKTSLESDNFYRLHYGSQIFPNLEVEQENLELIKIEDVRSSSDDLNEEMSEYSEENSYDSKARRKSYQQKLLFKPRPIQGQKGKLDSKTIYACNFCNTKLMRRSNISRHMLSLHDPTMKPFACIYCPFRFDDEEKKKLHEQRNHLHDVPSIIFCNICGASGSYQSGIDQHIQDDHCCENDSTENFLVKRRSEKFHPLPLSNQLPSLKYEDIWYKCNFCHKALKHKKNILRHIRRKHDPENLPFGCKLCIERFENIEQLNEHKKKHEKDDKIPLNVIFCEICGISGDNMEGMQNHKTDDHSLTLVKINKRIEVENLPICEPNKKSFSKFHPRVVPGFEHLKYDEIPYICNFCNKQLKPRKNLIRHMKRKHDPDELPFACRFCVERFVTIIECGKHESFHDHEPRILFCDICGASGDNKIGMENHMTDDHLKRNLENSLQSKQISESNESLNKCSKCDETFSTKFQLRNHEWLIHLKLYRQLNSEEVKQEMKCCACDETFATEISLLQHANIHRKEFGNVKCSHCPTPIRSFDKFLKHLQYHMKPKTHECTKCRKIFPFDSKMIEHIKSHRRKFNDKVICPKCPGKFRNNKFLEIHDKIKHCNQTLFMCPICAKSLSSEWALDNHIRYVHSTEDQRKHKCKFCPKKFTHKSKLNIHEATHSTERPFMCQICPARFKHKDGLVVHIRRHDGTLPKNFKCDQCSIRFVDRHRLAQHLLTHSGIKPHQCNYCDRSYTSKGDLVKHLQKSHIGNAVYRCEKCPEAFPRLIQLREHLQVHYEETQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00346930;
- 90% Identity
- iTF_00346930;
- 80% Identity
- iTF_00346930;