Basic Information

Insect: Clunio marinus
Gene Symbol: -
Assembly: GCA_900005825.1
Location: CVRI01000047.1:1833924-1841813[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.5e-05 0.0041 17.7 0.1 3 23 116 136 115 136 0.97

2 12 5.6e-07 4.1e-05 24.0 1.1 1 23 142 164 142 164 0.99

3 12 1.1e-05 0.00079 20.0 1.5 3 23 172 192 170 192 0.98

4 12 7.8e-06 0.00058 20.4 0.5 1 23 201 223 201 223 0.99

5 12 8.6e-06 0.00064 20.3 1.2 1 23 229 251 229 251 0.97

6 12 3e-05 0.0022 18.6 1.3 1 23 258 280 258 280 0.99

7 12 9.3e-06 0.00069 20.2 1.5 1 23 286 308 286 308 0.98

8 12 0.00025 0.019 15.6 0.7 1 23 315 337 315 337 0.98

9 12 0.00021 0.015 15.9 3.0 1 23 343 365 343 365 0.98

10 12 0.00035 0.026 15.2 0.4 1 20 371 390 371 393 0.93

11 12 9e-06 0.00067 20.2 1.1 2 23 400 421 399 421 0.97

12 12 4.5e-06 0.00033 21.2 1.8 1 23 427 450 427 450 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.5e-05	0.0041	17.7	0.1	3	23	116	136	115	136	0.97
2	12	5.6e-07	4.1e-05	24.0	1.1	1	23	142	164	142	164	0.99
3	12	1.1e-05	0.00079	20.0	1.5	3	23	172	192	170	192	0.98
4	12	7.8e-06	0.00058	20.4	0.5	1	23	201	223	201	223	0.99
5	12	8.6e-06	0.00064	20.3	1.2	1	23	229	251	229	251	0.97
6	12	3e-05	0.0022	18.6	1.3	1	23	258	280	258	280	0.99
7	12	9.3e-06	0.00069	20.2	1.5	1	23	286	308	286	308	0.98
8	12	0.00025	0.019	15.6	0.7	1	23	315	337	315	337	0.98
9	12	0.00021	0.015	15.9	3.0	1	23	343	365	343	365	0.98
10	12	0.00035	0.026	15.2	0.4	1	20	371	390	371	393	0.93
11	12	9e-06	0.00067	20.2	1.1	2	23	400	421	399	421	0.97
12	12	4.5e-06	0.00033	21.2	1.8	1	23	427	450	427	450	0.97

Sequence Information

Coding Sequence: ATGAGCATGTTCGATCAAATCAAAACTGAACctcttcatttttatcaatcgTCATGTCCTCAACAACTATCAGCTCAAATCACGCCACAGCAAATTCATCAAGCAACAGCAGCAGTATTGCAACAAAATCTTATTCAAAATCATCAGCATGCGACTGTTATCACTTtgaatgatgagaaaaataatgttCAAGCAAACAACACCGACGTTATTATCCCGACACTCGTCGATCACATCAAACCAGAGATAATAAATATAACATCGCAACCGAACATGCATCAAACACACGCTTCAAGTGGAATGACTCAtacaatttcatcttcaagaGCCAGTAAACCTCAAGCTTGTAAGGTTTGTGGGAAAGTTCTATCATCTGCAAGCAGCTATTACGTTCACATGAAGCTTCATTCTGGAATGAAACCATTTCAATGTTCAGTCTGTGATGCTGCTTTTTGTCGGAAGCCTTATTTGGAAGTTCATATGAGAACACATACAGGAGAGCGACCATTTGGATGCGATATTTGTTTGAAGCGTTTTAGTCAGAAATCATCTTTAAATACACATAAACGAATTCATACAGATACAATCCAAGATCGTCCTTTTCAATGTAGCCAATGCCCTTCAGCTTTTTCACGGAAACCTTACCTTGATATTCACATGAGAACGCACACTGGAGAACGGCCATttCAATGTGGAATTTGTTTGAAGAGATTCAGTCAGAAGTCGTCACTAAACATACATAAAACAATTCACTCGGcGGGTCATCGTCCATTTCAATGTACTCAATGCCCAGCAGCTTTCTGTCGTAAGCCATACTTGGATATTCATTTGCGGacGCACACAGGAGAACGACCTtTTGAGTGTGATTTGTGCCTCAAGAAATTCTCTCAAAgatcaacattaaatattcacaaaaggATTCATACAGTACAAGGACGACCTTTCCAGTGCACAGAATGCCCAGCAGCATTTTGTCGCAAGCCTTATCTTGATATTCACAACAGAATTCACACAGGGGAGAAACCTTttGTTTGCGAAGTTTGCTGCAAAAGATTCACTCAAAAGTCATCTCTTAATATTCATAATCGAATTCATACAGGAGTCAAACCTTATGCTTGCGATATTTGTTCGAAAACATTCTCAGTGAAAAGTTATGTAACAGCTCATCGATGGTCGCATGTGTCGGAGAAGCCTTTAAGCTGTGAAAGATGTTCAATGACATTCACGAGTAAAAGTCAATTTGCAATTCACATTCGAACTCATTCTGCagGTCAGAACTTTGAATGTAATTTATGTGGAAGGACTTTTATTCGTGATAGTTATCTGATAAGGCATCACAATCGAGTGCACAGGGATCGAGTACAAACTTCAAGTATAAATGCAACGATAAATGCTGTTGTGGCACAAGCGGCTGGTGTAAGTTCACCAAATGATGTCTTTGATAGCAATGGACAAATAGGTGATTTGAGCCGCTATGTATCAAGTCTTGCAACATCAGCGGTTCGCCAACAAAATCGAATTattcaaagaaatcttcaacaGCAGCCATCAATAATTATTCCTACTCAATTAACCCAAGCCATTGATAGTAAAGAAAATGTACAAGCGCAAATCCATAGCGTCATTCTAAGTAAAAGTGGTCCATGA
Protein Sequence: MSMFDQIKTEPLHFYQSSCPQQLSAQITPQQIHQATAAVLQQNLIQNHQHATVITLNDEKNNVQANNTDVIIPTLVDHIKPEIINITSQPNMHQTHASSGMTHTISSSRASKPQACKVCGKVLSSASSYYVHMKLHSGMKPFQCSVCDAAFCRKPYLEVHMRTHTGERPFGCDICLKRFSQKSSLNTHKRIHTDTIQDRPFQCSQCPSAFSRKPYLDIHMRTHTGERPFQCGICLKRFSQKSSLNIHKTIHSAGHRPFQCTQCPAAFCRKPYLDIHLRTHTGERPFECDLCLKKFSQRSTLNIHKRIHTVQGRPFQCTECPAAFCRKPYLDIHNRIHTGEKPFVCEVCCKRFTQKSSLNIHNRIHTGVKPYACDICSKTFSVKSYVTAHRWSHVSEKPLSCERCSMTFTSKSQFAIHIRTHSAGQNFECNLCGRTFIRDSYLIRHHNRVHRDRVQTSSINATINAVVAQAAGVSSPNDVFDSNGQIGDLSRYVSSLATSAVRQQNRIIQRNLQQQPSIIIPTQLTQAIDSKENVQAQIHSVILSKSGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00199249;
90% Identity: -
80% Identity: -