Basic Information

Insect: Belgica antarctica
Gene Symbol: -
Assembly: GCA_000775305.1
Location: Belgica.10:289381-298012[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5e-05 0.0021 17.8 0.1 3 23 113 133 112 133 0.97

2 12 9.4e-07 3.9e-05 23.2 0.7 1 23 139 161 139 161 0.99

3 12 9.6e-06 0.00039 20.0 1.5 3 23 169 189 167 189 0.98

4 12 7.2e-06 0.00029 20.4 0.7 1 23 198 220 198 220 0.99

5 12 4.4e-06 0.00018 21.1 1.4 1 23 226 248 226 248 0.97

6 12 4.2e-05 0.0017 18.0 0.8 1 23 255 277 255 277 0.98

7 12 4.1e-06 0.00017 21.2 1.4 1 23 283 305 283 305 0.98

8 12 0.00044 0.018 14.8 0.7 1 23 312 334 312 334 0.98

9 12 4.4e-07 1.8e-05 24.2 1.2 1 23 340 362 340 362 0.98

10 12 0.00012 0.0048 16.6 0.4 1 20 368 387 368 390 0.93

11 12 1.7e-05 0.00069 19.2 0.7 2 23 397 418 396 418 0.96

12 12 4.1e-06 0.00017 21.2 1.8 1 23 424 447 424 447 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5e-05	0.0021	17.8	0.1	3	23	113	133	112	133	0.97
2	12	9.4e-07	3.9e-05	23.2	0.7	1	23	139	161	139	161	0.99
3	12	9.6e-06	0.00039	20.0	1.5	3	23	169	189	167	189	0.98
4	12	7.2e-06	0.00029	20.4	0.7	1	23	198	220	198	220	0.99
5	12	4.4e-06	0.00018	21.1	1.4	1	23	226	248	226	248	0.97
6	12	4.2e-05	0.0017	18.0	0.8	1	23	255	277	255	277	0.98
7	12	4.1e-06	0.00017	21.2	1.4	1	23	283	305	283	305	0.98
8	12	0.00044	0.018	14.8	0.7	1	23	312	334	312	334	0.98
9	12	4.4e-07	1.8e-05	24.2	1.2	1	23	340	362	340	362	0.98
10	12	0.00012	0.0048	16.6	0.4	1	20	368	387	368	390	0.93
11	12	1.7e-05	0.00069	19.2	0.7	2	23	397	418	396	418	0.96
12	12	4.1e-06	0.00017	21.2	1.8	1	23	424	447	424	447	0.97

Sequence Information

Coding Sequence: ATGTTTGACCAAATCAAAGCGGAACCTTTGCACTTTTATCAATCATCGTGTCCCACTCAAATAACGGCCCAAATCAATCCCCAACAACAGCACCAGGTGACAGCCGTGCTACAACAGAACCAAATTCAAAACCAACAGAGTGCGACCGTCGTCACGATTAATGATGACAAGGATAATCTTCAACTCACAGATGCAATTATGCCGACCCTGATCGATCAAATAAAGCCGGAGATAATGAATCCGATGCCCACGATTCAGATTATTCATCAGTCACACGATGTTACCAACGCAACCACACAAGCGACGACGACGTCGCGAAACAGCAAACCGCAAGCTTGCAAGGTGTGCGGAAAAGTTCTGTCGTCAGCAAGCAGCTATTATGTCCACATGAAGCTGCATTCAGGCACAAAACCCTTTCAATGCTCAGTTTGTGACGCTGCTTTTTGTCGGAAGCCTTATCTTGAAGTACACATGAGAGTGCATACAGGTGAAAGACCTTTTGGCTGCGATATTTGCTTGAAGCGTTTCAGCCAGAAATCGTCGCTAAACACACACAAAAGGATTCACTCAGATGCGGTCCAGGACCGTCCATTTAAGTGCAGTCAATGTCCGTCAGCCTTTTCACGGAAGCCATACCTAGACATTCACATGCGgACTCATACTGGCGAGCGACCATTTCAGTGTGAAATCTGCTTGAAAAGgTTCAGCCAGAAGTCATCGCTGAACATCCACAAGACCATCCACTCTGcCGGCCATCGACCGTTCGTGTGTACGCAATGCCCGGCAGCGTTTTGCAGAAAGCCATATCTGGACATTCATTTAAGGACGCACACTGGAGAACGGCCTTTCGAATGTGATTTATGcctgaagaaattttcccaAAGATCAACGCTGAACATTCATCGTCGCATTCATACAGTTCAGGGACGGCCGTTCTCATGCACGGAATGTCCCGCTGCCTTTTGTCGAAAGCCCTATCTCGATATTCACTCTCGAATCCATTCTGGAGAGAAGCCTTTCACTTGCGTCGTTTGCAATAAAAGCTTCACCCAAAAGTCGAGCCTAAATATCCATTCGAGAATACATTCAGGCGTCAAACCCTACGCCTGTGATAtttgcaacaaaactttctcggTCAAAAGTTACGTGACGGCACATCGGTGGTCCCACGTCTCAGAAAAGCCGCTAAGCTGTGATCGCTGCTCGATGACCTTCACCAGCAAGAGTCAGTTCGCCATTCACATACGAATTCACAGTTCCGGCCAGAACTTTGAGTGCAACCTTTGTGGGCGGACTTTCATCCGTGACAGCTATTTGATTCGTCACCACAACCGAGTCCATCGTGATAGAGTGCAGACATCTAGTATAAACGCAACGATTAACGCTGTTGTGGCTGCCAACACTTCGGAAGAGTCAAGCAACTTGTTTGACAGCAATAACGACTTGAGCCGCTACGTGTCAAACCTTGCGGTTACGGCAGTGCGCCAGCAAGGCAGGATCATCCAAAGGAATCTCCAGCAAACGTCAATAATCATACCGGCCGAAATCACTCAAAGCCTAGACAGCAAAGAACATCTTCAAGCACAGATGCAGATCTTGAACAACGTCGGGCCGTGA
Protein Sequence: MFDQIKAEPLHFYQSSCPTQITAQINPQQQHQVTAVLQQNQIQNQQSATVVTINDDKDNLQLTDAIMPTLIDQIKPEIMNPMPTIQIIHQSHDVTNATTQATTTSRNSKPQACKVCGKVLSSASSYYVHMKLHSGTKPFQCSVCDAAFCRKPYLEVHMRVHTGERPFGCDICLKRFSQKSSLNTHKRIHSDAVQDRPFKCSQCPSAFSRKPYLDIHMRTHTGERPFQCEICLKRFSQKSSLNIHKTIHSAGHRPFVCTQCPAAFCRKPYLDIHLRTHTGERPFECDLCLKKFSQRSTLNIHRRIHTVQGRPFSCTECPAAFCRKPYLDIHSRIHSGEKPFTCVVCNKSFTQKSSLNIHSRIHSGVKPYACDICNKTFSVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKSQFAIHIRIHSSGQNFECNLCGRTFIRDSYLIRHHNRVHRDRVQTSSINATINAVVAANTSEESSNLFDSNNDLSRYVSNLAVTAVRQQGRIIQRNLQQTSIIIPAEITQSLDSKEHLQAQMQILNNVGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00346915;
90% Identity: -
80% Identity: -