Cmar000891.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- rfx7.L
- Assembly
- GCA_900005825.1
- Location
- CVRI01000047.1:2513511-2520621[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-33 2.7e-29 101.8 0.0 3 77 196 270 194 272 0.97 2 3 0.74 7.9e+03 -2.2 0.0 10 31 672 693 659 706 0.71 3 3 0.1 1.1e+03 0.6 0.1 24 41 896 913 891 917 0.86
Sequence Information
- Coding Sequence
- ATGACACAAAATCCTTTTCAACCTTGGAAGCAAAATTTTACTCTTTCTAATCAATTTTATCGCAAAAATGACACCGACTCTTCGTCGACATTCAATAAGGTGAAAGCTAATGAAGCTGGGCCATCAGTTTCCAACATGAGTATTTTATCGCAGCAATTGGACATGAGCAATGATTCGCAATCGTATCAGACATCTGTCACTTCTTCTAACAACATAAATCATCAGACTGAGATAGATCAGCTGCAACCAGTGAATAAATCGTCTCAGTGTaactcaaaattttcaattttttcgcaattattaaatttgaataaaataaacgcGTTCGATAACTTGCTGCTGAATGCTTCAATCAGTTTGGACGACGAGGAATTGAACAATGACAAGCGTCGAGGAATCAGGAAATTAATGGAACAAGCTATAAgCGATGAAGCTAAACAGcaaattacatttattttgGAGAAAATATCGACATTACGACCAACTGAAAAATTACTACTCTATCTTAAAATGCCTGGTGGACATTCTGAAGTTGACCCATTAAAACAGTCTCAAAATCCTCTTGGATCACGTTCTGAAATATCACATACAATCAATTGGGTACGATCACATTTGGAACACGATGAAAAAGTGTCCATACCCAAGCAAGAAGTTTATGAAGATTATGTGCAATTCTGTggaaaaatcaacattaagCCTCTGTCAACAGCAGACTTTGGAAAAGTCATGAAGCAAGTCTTTCCTGATATTAGACCACGTCGTTTGGGTACACGTGGACATTCTCGGTATTGTTATGCCGCTATGAGAAAGGCAACTAAGCTTCAACCGCCACTGCTTCCTGATTTATCGACATCAAATGAATCAAATGGAAGTGGTCATGGAAGTGAACATGCAACTTGGAATATCATTAAAAGCTGgtcagaaaaacttttaaatgctCAATTTGAGTCTGCTGATGATCTTGCATCACACATATCGCAACACAATCTGAACATGCATTCAACTTCTACCTCAAAACAACTTCTACATAAGAAGCTCATGCAACGCGAGCTCAAAGATAAACGAAGAGCTaGTCAACCATCAAAGAAGCGTCGCAAAAAGCGAAGACAGTCAACTGAATCACCTGATACTCTTCaagaaaatgatgaactttttgATGCAAACTTAcaaattaaacaagaaaaagaaacagatGGAAGTGCcgtggaaaataattttactgaTGAATCATCCGATGTGCCGATGAACCTCAGTTCAGAACAAGCGCGACGAGATCAACAAATTAATCCCATCACAGTACAATATCAAAATGATGTCAATGATATATTCAAAAGTAAAGAAGAaccgaaaacaaaaatgttattgTCGTCAGAATTGAATGACGAAGAACATAATGACAATCAATATGTTCTTTGTAAGAAAGTTCGCCAAGCACAACAACTTAAAATGACAGCAACAACGTCAATGCCTGGCAATTCATTGCATGATAATAACGTGAATGTTGCATCGCCAATTGTGAGCAGCTCTGAGATTTTACATGAGATGCTTATGCCATCAAAGATTCCGGCGAAAAGAAAGTcgagaaaggaagaaaacttGATGAGTTTGAAGAAGGGAAGATATCAAGAAAAAGTTGACATCAGTGAACATTCAACGCCATCGCCTTTGAATAATGTTGAGCCCAATGATCTTGTTGTAAAGAAAGATGATTTGAAAGAGGATTTTATTCTTCCACGTGAGCGTTTTATTAGCATTTGCAACATGGATAGAAATGCTCTTGACACATATTTAAATCCTAACGAAGAGAACTCGCAAGATCTCGAGCTGTTGCAATATTTTGGTGAAGACAAGAACAAAATTGCTAATTGCATTGAAGATGATTTGGGAGGCGAAGAAGCAGCGAATGTTTCcttgatggaaaattcttatcaTCACAACACTGAAGAAAATCCCATTGAGAGAAATTCTGAGAAATTGTCACAGCTTCGTTCGATGTTAGAAGAAAAGTATAACAACGCTTGCAATATAACAAACAGTGAATCCGTAATCAGAAGCTTATTACAAAAAAGTTATCAGCAACCTTCAAATGACTTGAACGATAACGATCAAATGAATGCTTACAATACGACTTCAGTATCAACAAATGTTGTTACACGTCATGCTACAACATCAAGTAACAACATGCCTCAATGTGTCCGATCAGTTTCAAGTGATGCGACACTTGGcaacaatattttattacattcgCCAAACACTCGTCGAAAGAACTTCAGCTTCGTTCCAATTCCATCTCAATCGATGCGaccaaaaaatattaacttaCATCCAGCATTCAAGGGTGACACACTTTCGAGTCCTTTCGTAAGTCCAAGGGCAACGCCACTCAACAGACGAGTGAAtcctttattaaatattagaAATCCTAATATGATTGATGCGAAATCAGTTCCTGTTTTGGGTATAAGCAACACGGCTTTCTGTCGGCCACATCAATTCAAAATGGAACCAGCTTCGGCACCGCAAAGTCCTTCAATGCTTCAAAATTACAACTACAGTCCACAAGCCCAgcaatcaaatcaatttcagttTCAAACGTTGTCAAATCAGGGTACAAATTACAATTATCCAGTTGAATCACGCTCACAAAGTGTTCCACCTCATTGTACAAATACAAACATGTTCAACAACAGTTATTCAAGCTATTCGTCTGCTTGCAGTTCAATGGCACCAACGCCTGTGCCTTCCGATTACCAGGAGTTTTCTGATTCTAATATTTTGGATATTTTTAATGGTGAACAAGCACCTTCATCTAACATAAAGTTGGAAGCCAACGACAATGTCATTGATATGCtcgataatgaaattttaaatcaaaccACAGACAACATTCAAGTTATGCGtcaaaattttgtaaatagTCGTTCTGTTCCCAACACACCATTACCTTTTAATACAAAttataacaataataacatCAATTCATTTTGTCCCGTTGGAAAATCTGTACCAACAACTCCAATTAGTGCAAATAATGGAAATCCCTTCCGATATAGTCCGGAACTGCAACGCACAAGAGATTTTCTCATTAATGGTTTCAATAAtcataacaataataacaacaacggCATTTTGAACAACAATactaataaaatatctaagaaCGAAAGCATGTCGAGCGATATTGATGAATTATCAAACTTAGACACAACGTTATTGAATAACTTGTGA
- Protein Sequence
- MTQNPFQPWKQNFTLSNQFYRKNDTDSSSTFNKVKANEAGPSVSNMSILSQQLDMSNDSQSYQTSVTSSNNINHQTEIDQLQPVNKSSQCNSKFSIFSQLLNLNKINAFDNLLLNASISLDDEELNNDKRRGIRKLMEQAISDEAKQQITFILEKISTLRPTEKLLLYLKMPGGHSEVDPLKQSQNPLGSRSEISHTINWVRSHLEHDEKVSIPKQEVYEDYVQFCGKINIKPLSTADFGKVMKQVFPDIRPRRLGTRGHSRYCYAAMRKATKLQPPLLPDLSTSNESNGSGHGSEHATWNIIKSWSEKLLNAQFESADDLASHISQHNLNMHSTSTSKQLLHKKLMQRELKDKRRASQPSKKRRKKRRQSTESPDTLQENDELFDANLQIKQEKETDGSAVENNFTDESSDVPMNLSSEQARRDQQINPITVQYQNDVNDIFKSKEEPKTKMLLSSELNDEEHNDNQYVLCKKVRQAQQLKMTATTSMPGNSLHDNNVNVASPIVSSSEILHEMLMPSKIPAKRKSRKEENLMSLKKGRYQEKVDISEHSTPSPLNNVEPNDLVVKKDDLKEDFILPRERFISICNMDRNALDTYLNPNEENSQDLELLQYFGEDKNKIANCIEDDLGGEEAANVSLMENSYHHNTEENPIERNSEKLSQLRSMLEEKYNNACNITNSESVIRSLLQKSYQQPSNDLNDNDQMNAYNTTSVSTNVVTRHATTSSNNMPQCVRSVSSDATLGNNILLHSPNTRRKNFSFVPIPSQSMRPKNINLHPAFKGDTLSSPFVSPRATPLNRRVNPLLNIRNPNMIDAKSVPVLGISNTAFCRPHQFKMEPASAPQSPSMLQNYNYSPQAQQSNQFQFQTLSNQGTNYNYPVESRSQSVPPHCTNTNMFNNSYSSYSSACSSMAPTPVPSDYQEFSDSNILDIFNGEQAPSSNIKLEANDNVIDMLDNEILNQTTDNIQVMRQNFVNSRSVPNTPLPFNTNYNNNNINSFCPVGKSVPTTPISANNGNPFRYSPELQRTRDFLINGFNNHNNNNNNGILNNNTNKISKNESMSSDIDELSNLDTTLLNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -