Ccur005091.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clostera curtula
Gene Symbol
-
Assembly
GCA_905475355.1
Location
FR997809.1:5878124-5893713[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00011 0.011 17.1 0.1 3 23 133 153 132 153 0.97
2 19 9.6e-07 9.8e-05 23.6 1.2 1 23 159 181 159 181 0.99
3 19 5.8e-06 0.00059 21.1 2.7 1 23 187 209 187 209 0.99
4 19 4.1e-06 0.00042 21.6 2.6 1 23 224 246 224 246 0.98
5 19 0.00031 0.032 15.7 1.0 1 23 261 283 261 283 0.98
6 19 5.5e-05 0.0056 18.0 3.1 1 23 298 320 298 320 0.98
7 19 3.8e-07 3.9e-05 24.8 1.5 1 23 335 357 335 357 0.99
8 19 0.00017 0.017 16.5 2.8 1 23 363 385 363 385 0.98
9 19 0.0002 0.02 16.3 0.0 1 23 392 414 392 414 0.97
10 19 1.2e-05 0.0012 20.1 2.1 1 23 420 442 420 442 0.99
11 19 0.039 3.9 9.1 1.8 1 23 449 471 449 471 0.98
12 19 3.7e-06 0.00037 21.7 2.5 1 23 477 499 477 499 0.99
13 19 0.045 4.6 8.9 1.8 1 23 506 528 506 528 0.98
14 19 2.6e-06 0.00027 22.2 1.5 1 23 534 556 534 556 0.99
15 19 0.00039 0.04 15.4 1.2 1 23 563 585 563 585 0.99
16 19 5.5e-06 0.00056 21.2 4.7 1 23 591 613 591 613 0.98
17 19 0.0021 0.22 13.0 0.3 1 20 619 638 619 641 0.93
18 19 4.1e-05 0.0042 18.4 1.4 2 23 648 669 647 669 0.96
19 19 3.2e-06 0.00032 21.9 1.3 1 23 675 698 675 698 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAGCAGATCAAGGCTGAGCCCATGAGTTTCTACACCCCACATCCACACATTCACTCCGGTCCTCCCACAATAATCCGGTCGGACTCCAGCCATGGAATCCTCAGTATGAACCAACATCATCACCAGGAGGACTCGAAGGATAGCCTTATAGTACACCAGCAAGTACAACACCAGGAACTCATGGAACAGCACCAACACCAACAGGAGATGCAGCAGCAACAAGATGACGAGCTTAGCTTCAAGGGAATGGAGGATGAAGGCGTTGAAATGGATATGGATGGCCGGCAATGTTCGCAGGGTATGGGCGTGGACATGGTATCAGTACAAACAAAAATGGAAGTACCCAACGGGGGAGGACAATCCACGCCGCGGTCAAAACCGCAAGCCTGTAAGGTTTGTGGTAAAGTATTATCTTCGGCATCGTCATATTATGTTCACATGAAACTACACTCCGGTAACAAGCCCTTCCAATGCACAGTCTGTGATGCAGCATTTTGTCGCAAGCCTTACTTAGAAGTGCATATGCGCACTCACACAGGCGAGCGGCCTTTCCAATGCGAACTCTGCCTTAAGCGCTTCACCCAAAAGTCCAGCCTCAATACACACAAACGAGTCCACACAGATGAGCACATGCGCGCGTTGACGGTGAAGGAGCGGCCCTACAAGTGTGACCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTGAACCGGCACAAGAAAATACATACGGAAGAACACAAACGCTCGCTGCTGGCTAAGGAACGCCCCTACCAATGTGGCACCTGCTTTGTGCGATTCACCCAGAAATCGAGCTTGGGTCGGCACGGGAAAATACACTCCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCGAGCCTGGGACGTCATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGTGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTCGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGACCATTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCGTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATCCATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCTGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACCCACACCGGCGAGCGACCGTATCAGTGCGACATCTGTATGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATACACAAGCGGACGCACTCAGTGCAAGGCCGGCCCTTCCAGTGCCTGCAGTGCCCCGCAGCCTTCACCTGCAAGCAATACCTTGAGATACACAACCGCACCCACACCGGAGAACGACCGTATCAGTGTGATGTATGCCTCAAGAGATTTGCGCAAAAATCGACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATACCTGCACGCAGTGTCCTGCAGCGTTCACTTGCAAGCCGTACCTGGAGATTCACATGCGCACACACACGGGCGAGCGTCCCTTCCAATGCGATGTCTGTTTCAAATGCTTCACGCAGAAATCCACGCTGAACATCCACAAGCGAATTCATACCGGCGAACGTCCGTATGCTTGTGATATATGCCAGAAACGGTTTGCCGTGAAAAGTTACGTGACAGCACACAGATGGTCCCACGTGGCCGACAAGCCATTGAACTGCGACCGGTGTTCCATGACCTTCACATCCAAATCCCAGTTCGCGTTGCACATCCGCACCCACACATCCACTTCGTGTTACGAGTGCAGTGTGTGCGGTCGATCTTTCGTCCGGGACAGCTACTTAATAAGACACCACAATCGCGTGCACCGCGACAACCATAGCAACGTGTCTGCGAACAGCATCGGAACCATCAACAGTGTGGCCACAAACACCAACAACTCCAACTTCGACTCCAGTGGCGTCTGCGACTTAAGTTTCGTCCCGATGGTGAATCGCTACATGACATCACAAGGCACTCAGGTGTCCATGCAAGACACGTCCAGCAAGATGTCCGCTATGTCGCCCCAGTCGATCGCCTCTATATCATCGCCCCCTCCTTCACACACGCCCACGCCCCAACCGATGTCTGGTCAGATGCACCTCGCTGACTGA
Protein Sequence
MFEQQIKAEPMSFYTPHPHIHSGPPTIIRSDSSHGILSMNQHHHQEDSKDSLIVHQQVQHQELMEQHQHQQEMQQQQDDELSFKGMEDEGVEMDMDGRQCSQGMGVDMVSVQTKMEVPNGGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCELCLKRFTQKSSLNTHKRVHTDEHMRALTVKERPYKCDLCQMRFTQSSSLNRHKKIHTEEHKRSLLAKERPYQCGTCFVRFTQKSSLGRHGKIHSEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICMKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYTCTQCPAAFTCKPYLEIHMRTHTGERPFQCDVCFKCFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTSTSCYECSVCGRSFVRDSYLIRHHNRVHRDNHSNVSANSIGTINSVATNTNNSNFDSSGVCDLSFVPMVNRYMTSQGTQVSMQDTSSKMSAMSPQSIASISSPPPSHTPTPQPMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00432457;
80% Identity
-