Calb002055.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- MBD-R2
- Assembly
- GCA_001014945.1
- Location
- JXOV01000260.1:277-2479[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-11 3.2e-07 29.9 0.1 6 73 51 116 46 120 0.82 2 2 0.79 3.7e+03 -2.3 0.0 45 59 367 381 365 390 0.77
Sequence Information
- Coding Sequence
- ATGGGCCAAAAGTCGAAGAAGCAGCAACGTCATCAGCCCGCGGTGATTGAAAGCACGGGCGAGGAATGGTTCTGTCACTGGGTAGACGACTGTCCGATGGGCGTGGAGACTCAGTTGGACGGAGCGGATGCGAAGAAGCGAGTGATAATCGTGGAGGATCACAGATTGCCCGAGGGATTTGTGAAGTACTTTTTGGAGCGGCCGAACGTCTCTTCGAAGTGGGACGTGGTGATTCGACACCCGAGCGGAAAGAGGTTTAGGAGTCGTCAGGAGGTGAGATCGTTCATGGAGGAGAATGGGGAGCCCTTCAATTTGGCAGACTACGACTTTGCCATTCACAAGAAAAAGGCGAAAGAAATGGGGGTTTATACTTACACGGATGATTATCGAAAGTACATGAAGTCCCTTTATCCAAGTCTCACGGAAATTGACACCATTCCCAAGGCTGCAATTCAACCATTGGTTCCCCTGTATCCAGCTGGAGATGTCGTGGAGCAAAACTGGTTAATGGTGGACGGATTTAAAGTGCAAATTATCGATAATTTGCTGAGATGTCCAAAGGAGGGTTGTTTAAAGAACTTCCGAAAAGAAAACTTACTCAAAATTCACATCAAGCATTACCACGAGGATATTGCCTCTAAGATTACAGCTCCTCCAACAATGACGGACCTGGCTTATCAGAGGACTAAGAGTCAAATCATTGAAGATGTCCCTGGAAGAAGTCCAGAACCAGTGAAAAAGAGCCAGGAGAAGGTCAATAAAGTGGTGGAAGTGAAACCGAAGTTGGAAATTAAAGTGGAAAAACCGAGCATATTAGAGGAAGTCCTCACAAAAACAGAGCCAGTGGAGAGTCCTTCAGTTCCTTTGGCAGAAAACTATTACACACCTCTTCCTGAAGTAATAAAGAAAGCTAAACCTAAATCCAAATACAAGTACCCGAAAagtttaaaacgaaaaatgaccaaaaagtatttaaaacgaACCCTAACCAAGAGGATGAGCTTCAAAGaagttgattttataaatgaaccACCTCAGCCAcctttgaagaaaattaaactCGAAAACGAAGTAGGTGATGATACTATTGTCTTTACGGAAAAAGTTCAACCTCAACAGTATATTAATGAGCATGGTGAAGTCATAAAGATTGTGAGAATGAAGCAGGAGGAGATCATCAACTGCCTCTGTGGCCTGTCCGAGGAGGACGGATTAATGATCCAGTGTGAACTGTGCCTCTGTTGGCAGCACggttattgtaataatattttaaaggagTCCGAAGTGCCAGAAAAGTACATTTGCTACATCTGTCGCTACCCAGATCGGGGTAGGACTTCAATGAAGTACGTTCACGACCAGGATTGGCTCTTCGAAGGGAAATTACCAACGGGTAATTATCATTATTCGGATAAATCGTCCCTTCAGAAAAGATTTGACGTTTTGAAAAAGACGCATACTTTGACCGGTAATTTGTTGGAACTGAAGAGATTTATGCACAGTCTTAAGACGAAGCTCAAAATTGCGGATAATAAAGACCAtccaaaattgtatttatggtCAAAGCGGTGGGATCCGCCAATTCTACCAGAATcggaagaaaataaaatggatgtaAGTAGACTCTCGTCGCCGCAAAAGGCTTTCAATCCAGAGCCAAACGTGCCCCAACCAGAGGCAGCCATCGATTCCAGGGAGTGCCAAAGGCGACTCCTAGAGCACATCAAGGACATGCAATCTTTAGCCATGAACCGGCTAGACTCCATCGAACAACAAATTGAAGTTATTGAATCGTTTGACCCAACAACGAAATTGGATCCAGAAGACAACTGTCACCACCTCAAGGGCGCCCTTCGCATGATGATCCAAGACATGGGTGCTGTACAAACTATGGCCCTTACAGATAATTCAACCGCTTAA
- Protein Sequence
- MGQKSKKQQRHQPAVIESTGEEWFCHWVDDCPMGVETQLDGADAKKRVIIVEDHRLPEGFVKYFLERPNVSSKWDVVIRHPSGKRFRSRQEVRSFMEENGEPFNLADYDFAIHKKKAKEMGVYTYTDDYRKYMKSLYPSLTEIDTIPKAAIQPLVPLYPAGDVVEQNWLMVDGFKVQIIDNLLRCPKEGCLKNFRKENLLKIHIKHYHEDIASKITAPPTMTDLAYQRTKSQIIEDVPGRSPEPVKKSQEKVNKVVEVKPKLEIKVEKPSILEEVLTKTEPVESPSVPLAENYYTPLPEVIKKAKPKSKYKYPKSLKRKMTKKYLKRTLTKRMSFKEVDFINEPPQPPLKKIKLENEVGDDTIVFTEKVQPQQYINEHGEVIKIVRMKQEEIINCLCGLSEEDGLMIQCELCLCWQHGYCNNILKESEVPEKYICYICRYPDRGRTSMKYVHDQDWLFEGKLPTGNYHYSDKSSLQKRFDVLKKTHTLTGNLLELKRFMHSLKTKLKIADNKDHPKLYLWSKRWDPPILPESEENKMDVSRLSSPQKAFNPEPNVPQPEAAIDSRECQRRLLEHIKDMQSLAMNRLDSIEQQIEVIESFDPTTKLDPEDNCHHLKGALRMMIQDMGAVQTMALTDNSTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -