Calb007019.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- Lrrfip1
- Assembly
- GCA_001014945.1
- Location
- JXOV01009276.1:44373-44947[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.015 1.4e+02 1.7 1.2 119 153 28 63 8 74 0.63 2 2 2.5e-28 2.3e-24 86.3 14.1 1 87 76 160 76 161 0.86
Sequence Information
- Coding Sequence
- ATGGAGGACTTGGACACGAACAATAACGTCCAAATGGACAATCTGATCGAGACCATGAATGAACAGttgattttaaggaaaagTGGTGATTTACTGAAAGATAACCTTAAAAATCTTAGTGATGAATATAATAGTGAGGAGGAGGAGACTGAAAATGCCACAGATGAGGAATACGATCCGGATAAACATATCATTTCCACCTTTCTAGAACACACCACTGATTtaGCGGAGGCACGGCTTGCGGCTCGTCGTCAAGCAAGAGCTGAGGCGAGAGAGATTCGGATGAAAGAGTTGGAACGCCAACAAAAAGAGCTAGAGCAAAATGCGGATCGAGCCTTTGATCTTCAGTCGGAAGTTATCGGATCGACCAGGGCTAGGTATACCCTCTCCGCTGCCTCAACACCAGGCACTAGGAGTAATACCATGTCGCGGAGAAGCAGTGAAGACTCTCTGGAAGAGGATGGCCGGAATCATAGGGACATTC
- Protein Sequence
- MEDLDTNNNVQMDNLIETMNEQLILRKSGDLLKDNLKNLSDEYNSEEEETENATDEEYDPDKHIISTFLEHTTDLAEARLAARRQARAEAREIRMKELERQQKELEQNADRAFDLQSEVIGSTRARYTLSAASTPGTRSNTMSRRSSEDSLEEDGRNHRDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -