Calb003444.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001014945.1
- Location
- JXOV01002134.1:76-4535[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-70 2.8e-66 223.9 22.5 94 300 1 193 1 193 0.94 2 2 0.0022 20 4.3 2.6 216 251 218 252 196 268 0.48
Sequence Information
- Coding Sequence
- gAATTGGAGGAGCGGTTCCGCAAGGCGATGATCACCAATGCGCAGATGGACAATGAGCGTGCATCACAATCGTACCAGATCCAGTTACTGAAAGACAAACTGGAGGAGGTGGAGGAAACAAGGGCGCAGTTGCAGCGTGAGCACCGGGACAAGTGCCGCGATTTTGAGCTGCTGAAGCGGGCCAATGAAAAGCTACAAGAGGAGTATCGGCTGGTGCAAGGTCAACTAAGCGAACGCGACTCCCTCATAGCTGAGCGTGGCCTGGTGATAGTTTTAGTGGAGAACGAGGATGGCTCCGATGCCAAACGGACACTAGTCAGTGTAGATAATGCCGAATTGTTGGAATCTGTTCAGGGATCTTTAGatgtacgattaaagaaattgaacgAAGAAAAGCAGAAGATGGAATCAGAAATGCAGACCATGCGAGAGGAACTTAGTGAATTCAAGTCGCAAAGGCGATATGGATCAATGAATGGACCAAACGGCGAGGATTGGGAGGACATTCAGCGGGAGACTCAGAAGCAAATAGCCGAATACCGGTTTAAGCTACAGAAGGCGGAGCAGGAGATCGCCACCCTTCAGTCAGGACTGGCTCGATCAGAGACGCAAATTATCAGATACAAAAGTATAGCGGAGGCGAACGAAAAGTCGGAAAGTGAACTGAAGATCGAAAAGCGGAAGCTGCAAAGAGAgTACCGGGAATTGGTGGAGCGAGTGGAGGAGCTGGAGACTGCGAACAGTCACTTGACGAAGCGGCTGGACAAGCTGAAAAATGCGAAAAGTGCTCTATTGAAAGAAATCTGA
- Protein Sequence
- ELEERFRKAMITNAQMDNERASQSYQIQLLKDKLEEVEETRAQLQREHRDKCRDFELLKRANEKLQEEYRLVQGQLSERDSLIAERGLVIVLVENEDGSDAKRTLVSVDNAELLESVQGSLDVRLKKLNEEKQKMESEMQTMREELSEFKSQRRYGSMNGPNGEDWEDIQRETQKQIAEYRFKLQKAEQEIATLQSGLARSETQIIRYKSIAEANEKSESELKIEKRKLQREYRELVERVEELETANSHLTKRLDKLKNAKSALLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -