Calb005160.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- PAXBP1
- Assembly
- GCA_001014945.1
- Location
- JXOV01020926.1:24130-31765[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.2 1.8e+03 -1.7 0.0 176 247 323 399 303 412 0.63 2 2 2.4e-35 2.2e-31 109.5 0.0 4 269 572 777 569 781 0.93
Sequence Information
- Coding Sequence
- ATGTTCCGAAAACCGAAGAAATCTATCCAGAGACGGGTTTTCAGCTCTTATGGGGATGAAGGGAATGAGGATGATGACAGGCCAACGGAAAATGTAGAAGAATCGAAGAACGTGGTTAGTGAAAAGAAGGAAAAGATCTCGGTTAATGAAAAGGCAAAAAAGTCCTTATTAAGCTTTGGGGATGAAGATGAGGATGAGGAGGTGTTCCAAGTGAAAAAGTCTACCCACAGCAAGAAAGTGATGCGAATGTTGGACAAGGAGCGCCGGAACAAGAAAAAGAACAAGGATTCTTCGAAAGACGAGGAGCATAATCGCAAGACAGAGTCTAATGCTAGTGTCCTGTCTTCTGTGCTAAGTAAAAGCAAATCGGAGTCCGAAAATAGTTTGAAAACGGACCACGTTTccaaacataaaaatcatactGAAATTCGCGAAGACGACTTTGTGGTGctggttaataaaaaatcagagCCGAATCACATTCTGAATGGAAGGGCAGCGCTCTGTGCGGGACGTGATGATATGTCAtcagaagaggaggaggaagaagagGAAGTGTCGGCAGGTCACAAATTTGCACAACCCgacttcaaatttgttctagAAAGTGGGAAGATCCCAGACGCAGCAATGATCCATGCAGCAAGGAAGAGGCGACAAAAGGCTAGAGAACAAGgtgATTTTATTCCTGTTGAGGATAAGGATGAGAAAGCACCATCAACACGTCGCTCTCAAGATGATCAGGACGACGATAATTCGGAGGAAGAGGAGAGGATTGACATGAACGCCATAACTGGAGTGAAAGAGCGCGAAGAAAGGCGAGAGAAATTTTATTCGGTTCAGCAAGAGTCTGAGGATGACTCTGACTACGAGTTGAATGAGTGGGAAAATCAACAGATTCGAAAAGGTGTAACTGGGGCTCAATTGGTATCTGCTCAACAGGAATCTGTTCTGTCACAATTCATGATCCAACCTCAAATTCAAAGCCAGTTGGAGACGAACATGTCGACTGGGGCTCTTCTGGAACAGGCCTACGCCAGGAATTGTATGGAAAAGCCGAAAACAATCATTTCTAAACAGAAGAGTGAGAAAAGCAGTGGTCCAAAAATGCCTCGAGAAGTTTTATCGAAGCTTAAAGATCGGATTCAAAGTGTTCGAGGTTTGAACACCAAACATTTAGAGGATATAGACAACATAACTACAGACTTGAAGCTGTTAAAAGTGAATGCAATTGAGGCGGAACAACAAACTCCAATCGCTGCGGGTCGGTATCGATTTTATCAGGAGTTGAGGGGTTATGTGGCGGATTTAGTGGAGTGTATGGATGAGAAACTGCCTCAAATTATCGACCTGGAGAAAAGAGCTATGGCGGTAATGAGCAAATTTAAGACTAATCTAATTGAAAGACGTCGTCAGGACATTCGAGATCAAGCAAAGGAAGTTTCAGAATCAACTGCGAAATTCAACGCCAAGAAGCTGCCCGATGATGAGGAAAGGGTAAGAAGAGCAGCGGAAAGGGAAGGCAGAAGAACGCGAAGGAGAAGAGATAGGGAACGAATTAACCAGAATGAGACCCATTTAGATGGAATGTCAAGCGACGATGAAATTCCAGACCAAGAATCAGTTCAATACAAACAACAAATGGAAGAAATTTTAGAGGAATCCACTTACGTATTTGAAGACACAACAGAGTACTTTTGTGATATTGCTCTAATCCTGAAAAAGTTTTCGGAATGGAAGAGAAAGGACTTGAACGCTTATAAAGACGCCTACGTGAGTGTTTGTTTGCCGAAAATAGTTGGCCCCTTGATAAGGCTGAAAATGATTGGCTGGTCTCCTTTAGACGAAAGTTGTAAAGACTTTGAAAAGATGGATTGGTACAAAAGTTGTATGCTGTACGATTATGAAAATGGAGAGCAAGAAGATCAGCTGAGAAACGATTCAGATGTACGATTCGTGCCAGTTTTGGTGGAGAAAATTATCTTACCCAAGTTAACAGATCAAATCGAGAACTGTTGGGATCCGTTGTCAACGTCTCAATCGCTGAAATTGGTGGGTTTGATTGGGAGGCTGGGACGAGATTATCCATCATTGCGGAACTCTTCGAAGACCACCCAAACTTTGTTCTCATCCATTGTGGAGAAGATAAAAGCCGCTTTagacaacgacattttcattccaatttttgcaaaacaaGTGCAAGAAGCAAAAACATCGTTTTTCCAAAGACAGTTTTGCTCCGGGCTGAAACTGTTTCGGAATATTCTAAGCTGGCAGGGGATAATTTCGGACAATAGTCTACGTGACATCGCCATCTCGTCGCTGTTGAATCGGGATCTACTTTCAGCGATGCGAGTTTGTTCCCCGAACGACGCCATCTCGAAATCCCACATAATTGTTTATACATTGCCCCGAGTCTGGTTGCAGCAGGACAGCGAACTACTGCATAACATGGAGATGTTTATCACATTCTTAAAACACATAGCCAGTCAGCTGGACCCTAAAAACCCCATTCACatGGAATCGATTGAGAAAATCTTAAAGATATTAGCTAGTTTACatgcaacaatttaa
- Protein Sequence
- MFRKPKKSIQRRVFSSYGDEGNEDDDRPTENVEESKNVVSEKKEKISVNEKAKKSLLSFGDEDEDEEVFQVKKSTHSKKVMRMLDKERRNKKKNKDSSKDEEHNRKTESNASVLSSVLSKSKSESENSLKTDHVSKHKNHTEIREDDFVVLVNKKSEPNHILNGRAALCAGRDDMSSEEEEEEEEVSAGHKFAQPDFKFVLESGKIPDAAMIHAARKRRQKAREQGDFIPVEDKDEKAPSTRRSQDDQDDDNSEEEERIDMNAITGVKEREERREKFYSVQQESEDDSDYELNEWENQQIRKGVTGAQLVSAQQESVLSQFMIQPQIQSQLETNMSTGALLEQAYARNCMEKPKTIISKQKSEKSSGPKMPREVLSKLKDRIQSVRGLNTKHLEDIDNITTDLKLLKVNAIEAEQQTPIAAGRYRFYQELRGYVADLVECMDEKLPQIIDLEKRAMAVMSKFKTNLIERRRQDIRDQAKEVSESTAKFNAKKLPDDEERVRRAAEREGRRTRRRRDRERINQNETHLDGMSSDDEIPDQESVQYKQQMEEILEESTYVFEDTTEYFCDIALILKKFSEWKRKDLNAYKDAYVSVCLPKIVGPLIRLKMIGWSPLDESCKDFEKMDWYKSCMLYDYENGEQEDQLRNDSDVRFVPVLVEKIILPKLTDQIENCWDPLSTSQSLKLVGLIGRLGRDYPSLRNSSKTTQTLFSSIVEKIKAALDNDIFIPIFAKQVQEAKTSFFQRQFCSGLKLFRNILSWQGIISDNSLRDIAISSLLNRDLLSAMRVCSPNDAISKSHIIVYTLPRVWLQQDSELLHNMEMFITFLKHIASQLDPKNPIHMESIEKILKILASLHATI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -