Calb004521.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- sip1
- Assembly
- GCA_001014945.1
- Location
- JXOV01013722.1:32640-37891[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-92 5.5e-88 295.2 13.9 2 275 393 658 392 658 0.97 2 2 0.27 2.5e+03 -2.2 0.1 158 187 671 699 663 709 0.50
Sequence Information
- Coding Sequence
- atgtcTGACGAAGAGTAcgaaaagtttgaaataaacGACTACGATTTGGAAAACGAGTTCAACCCTAACAGAAATCGTCGCCGGCCGACAAAAAATCAACAGATTTATggAATTTGGGCTGATGACAGTGACCAGGACGAGGGTGGACCGAGTACCTCACGTCGGGGCCGTCGTACTGCACAGGACTACAGTGCTCCGGTGAATTTCGTGGCTGGAGGAATCCAACAAGCCGgtaaaaagaaggaaaaagaTGGAACTAAAAAAGATGGCCAGAAATCAGACGAAAGTGGCGAAGATGAGGGCCGTCCAAGCTTTGGTGGGGATAATACCTCAAGTGAAAGTGATGGTGAAGCTCAGGAAATGGCTGGGTTTAGAAATAGACCCACTGGACCAGCTCAAAAGTTCCCCGGTAATATTGCAAATTGGGAGAAACACACTTCGGGAATCGGCTCCAAATTGCTCTTAAAAATGGGCTACGAGCCGGGAAAGGGATTAGGAAAGAACCTACAGGGTATTTCCACTCCAATTCAAGCCCAAGTGAGAAAGGGAAGGGGTGCGATTGGCGCATACGGTCCTGAAGTTGGACAAACTTTGGCCGATCAAAAGAAACCGGCCAAAAAGATGGACCAAGATGAAAAGGAAACTGCTGAATTTCAGGAAAAGATGCAGCAATGGAAGAAGGAACCGGGAAAAGGAAAGAAGTttcgttattttaattacaaaactcCAGAAGATTTAATTTCCGAAAAAGGGAAAAGAGGTTATAATTATTCCGGTAACGAAAAAGCTTCAAATAAACTGGGCCAAGTAACAGTAATCGATATGACTGGACCGGAGAAGAGAGTCCTAAGCGGATACCATGCTTTGGGACAAAGTAGAGCCGCCACGGATGAAGTAATTTACGAATCTACTAAGCAAGACAAAATgcttaaaaccaaaaatttcgCCCTTCCCGAGTTGATGCACAATTTAAACCTTATTGTAGACATGTGTGAACAGGAGATTATAGCCAATGATCAAGCCCAGAAGTCTGCAATTGACAAGGAAACTTCTTTGAAAAGAGAAAGGGAAAATTTGGAGAAAGTTGTTGAATTGGAGTCGAagcatttgataaaattagaaGAGGTCGAATCTTTAGTTGAAAGTTTAATCGATCCCAAAGACGATTTGACTTTGGAGGCAGCAGAAAGGGTCTTTTTGATCCTTCAAACAGATTACGAGAGTGAATTTGAGGACTTTGGTTTGAGTGATTTAGTCCCTGGGATAATTGCTCCCTTGATAACAGCTAAATTATTAGAATGGCAGCCTTTAAAAGACCCAACAGCTCACATTGATATTCTAAAAAGATGGCGagagattttaaaacaaaaagacaTCTCTTCAGCCACCCTTTTTGAACCTTATTCAGTTCTAATTTGGTCAGGAGTTGTTCCTTCTATTAGACAGTCTGCTTCAATTTGGAATCCAAGATCCCATCAACAGATGATCGCTCTTTTAGACGCCTGGGCACCTCTTTTTCCCTCTAGAATCTTTGACAACATTTTAGAGCAAATAATTCTCCCTCGACTGGTTTCTGGGGTGGAAGAATGGGACCCTTTGACAGATACCACCCCCATTCACGTTTGGATTCACCCATGGACAGGGCTTTTAAACGAGAAACTGAATGAGAAAATCTTTCCAACAATTCGAGAAAAATTGGGAGTCGCTTTAAAAGCGTGGATGCCGCAAGACAGATCAGCCCTGGCCATGCTACGACCCTGGAAAAGCGTCTTTGCCGATGGAGATCTACAGTCCTTCTTATTCAAACACATTCTACCCAAACTACAAGCGGTTCTGTCCGATTTTATTATCAACCCATTGCAACAAGATTTAGAACCTTGGAACCAAGTATGGGAATGGAACGAAATGATGTCGGTTCAGTCAATGGCTCACCTTTTGGACAAATTCTTCTTCCCTCGGTGGATGCAAACGCTGGTTATTTGGCTGAATCAGAACCCAAATCTGGATCAAGTGGTCCGATGGTACACAGGATGGAAGAACTTATTATCAGAAGACATTCAGAAGCAGACCAACATTAAGGAGCATTTGAGGAGATCTTTAGAACTGATGCACAGAGCGACTGGATCTGTTAATATTCCAGTTCCGGATCCTCCGATAATTTCAATTCCTCAGATTTCAAATCCACCACCTACAATGATGGACTTGCAAGCGCCTCCTCCACCAACAATCGAATTCAAGGAACTGGTCAGTCAAAAGTGTGCAGAAAGAGGAATTATATTCGCCCCAATGCCAGGCAGAAGGGAGCAAGGAAAACAGGTTTATCGAATCGGGAAGCTGTTCTGCTATATTGACCGATCTGTAATCATGATGAGtgatggaaatttaaaaaactggaGCCCAGTTTCACTAGTATCGATTATGGAGAAGGCTGTTTTAGGCTATAAATGA
- Protein Sequence
- MSDEEYEKFEINDYDLENEFNPNRNRRRPTKNQQIYGIWADDSDQDEGGPSTSRRGRRTAQDYSAPVNFVAGGIQQAGKKKEKDGTKKDGQKSDESGEDEGRPSFGGDNTSSESDGEAQEMAGFRNRPTGPAQKFPGNIANWEKHTSGIGSKLLLKMGYEPGKGLGKNLQGISTPIQAQVRKGRGAIGAYGPEVGQTLADQKKPAKKMDQDEKETAEFQEKMQQWKKEPGKGKKFRYFNYKTPEDLISEKGKRGYNYSGNEKASNKLGQVTVIDMTGPEKRVLSGYHALGQSRAATDEVIYESTKQDKMLKTKNFALPELMHNLNLIVDMCEQEIIANDQAQKSAIDKETSLKRERENLEKVVELESKHLIKLEEVESLVESLIDPKDDLTLEAAERVFLILQTDYESEFEDFGLSDLVPGIIAPLITAKLLEWQPLKDPTAHIDILKRWREILKQKDISSATLFEPYSVLIWSGVVPSIRQSASIWNPRSHQQMIALLDAWAPLFPSRIFDNILEQIILPRLVSGVEEWDPLTDTTPIHVWIHPWTGLLNEKLNEKIFPTIREKLGVALKAWMPQDRSALAMLRPWKSVFADGDLQSFLFKHILPKLQAVLSDFIINPLQQDLEPWNQVWEWNEMMSVQSMAHLLDKFFFPRWMQTLVIWLNQNPNLDQVVRWYTGWKNLLSEDIQKQTNIKEHLRRSLELMHRATGSVNIPVPDPPIISIPQISNPPPTMMDLQAPPPPTIEFKELVSQKCAERGIIFAPMPGRREQGKQVYRIGKLFCYIDRSVIMMSDGNLKNWSPVSLVSIMEKAVLGYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -