Cdip016962.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451263.1:29294934-29295802[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.012 36 4.6 0.0 26 43 43 60 36 65 0.88 2 4 0.00044 1.4 9.2 0.0 17 46 62 91 52 99 0.82 3 4 0.19 5.8e+02 0.8 0.2 22 42 95 115 91 121 0.71 4 4 1.9e-05 0.059 13.6 0.3 4 46 163 205 161 213 0.86
Sequence Information
- Coding Sequence
- ATGGAAGATGCTGATGTTGCACATTATGGCCAAAGGCTGTTCGGTTGCCAAGAGTGCAACATGGAATTCCCAATCAAATATCTGCTTGAACAACATCTTCTGGATTCTCACCAACTCTATAAGTATATCTGTGACATTTGCGGTGCGGTAttgaaacacaaacaaaacgtGTGGACGCACAAGAAAAAACACAACTCTGAGCGGCCGTTCACCTGTTCGGTGTGCAATAAGGGATTCAAGCTCAAGCAATATCTGAAGGACCACCTAGTCATTCACTCAGGTGAGAAGAAGCACGTCTGTCCAGTATGCAACAAGGCGTTCGGGCACAGGCAAATCTTGCATAAACACTCACGCATCCACACAACCGAGAGAAATGAGTCGGAAAAGAAGAACGCAGCCAACTCAATATCCAACACGGACAAAGATTTGCTAAAGCAAAATCGGATTTCTTATGAAATAAAGAAGTTCATCTGTGAGACTTGCGACAAAAGATTCAAGTACAAATCAGACTTGGAAAGGCACAAGAAGGCCCATAGCTTTGAGCGGCCGTTCACCTGTTCGGTGTGCAGAAAGGGATTTAAGCGCAGCTACGCCCTGAATCGGCACTTAGTCATTCACTCAGGTGAGAAGAAGCATGTCTATCCTGAATGTGTATCCGCAATTCGCATGGTTATGGAGATCGTGCTGTCAGCGGACACACCCTCACCCACCGACGACCCCTCAATTGATAAACGTCTGCCAATGCGATGA
- Protein Sequence
- MEDADVAHYGQRLFGCQECNMEFPIKYLLEQHLLDSHQLYKYICDICGAVLKHKQNVWTHKKKHNSERPFTCSVCNKGFKLKQYLKDHLVIHSGEKKHVCPVCNKAFGHRQILHKHSRIHTTERNESEKKNAANSISNTDKDLLKQNRISYEIKKFICETCDKRFKYKSDLERHKKAHSFERPFTCSVCRKGFKRSYALNRHLVIHSGEKKHVYPECVSAIRMVMEIVLSADTPSPTDDPSIDKRLPMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00344617;
- 90% Identity
- iTF_00344617;
- 80% Identity
- iTF_00344617;