Basic Information

Insect: Cloeon dipterum
Gene Symbol: -
Assembly: GCA_949628265.1
Location: OX451262.1:2026415-2029374[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.098 3e+02 1.7 0.1 20 44 196 223 175 227 0.74

2 10 0.44 1.4e+03 -0.4 0.1 26 46 259 279 248 282 0.85

3 10 0.00044 1.4 9.2 0.0 18 52 281 315 271 315 0.88

4 10 0.0032 10 6.4 0.1 21 48 312 339 308 345 0.86

5 10 0.0022 6.8 7.0 0.3 14 50 400 433 388 437 0.80

6 10 0.007 22 5.3 0.2 22 43 435 456 430 461 0.90

7 10 1.2 3.6e+03 -1.8 0.0 40 49 484 493 477 500 0.85

8 10 0.27 8.5e+02 0.2 0.1 26 46 494 514 484 519 0.77

9 10 0.00021 0.65 10.2 0.4 22 45 521 544 514 553 0.89

10 10 1.3 4.1e+03 -2.0 0.1 21 32 548 559 544 565 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.098	3e+02	1.7	0.1	20	44	196	223	175	227	0.74
2	10	0.44	1.4e+03	-0.4	0.1	26	46	259	279	248	282	0.85
3	10	0.00044	1.4	9.2	0.0	18	52	281	315	271	315	0.88
4	10	0.0032	10	6.4	0.1	21	48	312	339	308	345	0.86
5	10	0.0022	6.8	7.0	0.3	14	50	400	433	388	437	0.80
6	10	0.007	22	5.3	0.2	22	43	435	456	430	461	0.90
7	10	1.2	3.6e+03	-1.8	0.0	40	49	484	493	477	500	0.85
8	10	0.27	8.5e+02	0.2	0.1	26	46	494	514	484	519	0.77
9	10	0.00021	0.65	10.2	0.4	22	45	521	544	514	553	0.89
10	10	1.3	4.1e+03	-2.0	0.1	21	32	548	559	544	565	0.82

Sequence Information

Coding Sequence: ATGACGTCGAGCGTGACCGATTTGTGCCGCCTATGCGGCACAGACACCTTCAACATAGTGCGGCATCATATTTTTGAAGCCGAAAGCTTGGCTAAATGCATAGCCAAAAAGATCGCCGAATGCCTACCTGTGAACGTCACACCGCAGGATCGGCTTCCTAAACACATGTGCGGCGAATGCGCGTACAAACTGGACCTGCTGAGCGAGTTCAGAGACAAAGCCGTCAAGACTGAGCATCTCCTCGAATCCCTGGTGGATGGGGTCAAGCCTGAGATATTAGAGAATGAAGAGCCTGACAATGACTTGGGAGCCGACGACGGCTTTCGGTCGGACAGTCCGGATCAGCCAGAGCCGGAAGTGCTGATCAAAGAGGAGGATGCGGAACCACGTCCGGAGAGGAGACCCGTACGAAAGGCGGCTAGGAAGGTCGGAAGGCCGCGAGGCCGAAAGAGGAAACAGACTGAGATTGAGCCCGACACTGAGGAGGAGGTGGAATCCGAGGAGGCGCCCAAGAAGGCCGTTAAGAAGGAAGAAGCCCCTCCCAAGGTGTACAGGAAGCGCGGCCGCAAACCCAAGAATAACAAGGAGAGCCCAGGGTGGGAGCGGCCGTTCGTTTGCCACATGTGCGGCCGCAGCtaccgcagcagcagccacctgAGCGGCCACTTTAAAGTGCACCTGCCACCCGAGTTCAAGTGCGAGTTCTGCGGCAAACAATTCGTGTACAAGCGCCACTTGGGCCAGCACGTGGAGCGCCACTTGGGCGTGACGCACCAGTGCGAGGTGTGCGGCACGCACTTCAGCCAGTCCAATTCGCTGTCCACGCACATGCGGACGCTGCACTCGCAGATCGAGAAGCCGCTAGCGTGTGTCGTGTGCCTGAAACGGTTCGGCCGAGGCGAGGACCTCAAGCGCCACATGCGAATTCACACGAACGAAAAGCCGTACGCGTGTAACCTGTGCCAGTGGAAGTTCACGCAGTCGAGTCAGCTGCGCACGCACAAGATGGGCAAACACGGCATTATGCCTCACATTTGCGACCTCTGCGGCCAGGGATTCCGAAACAAGCCGCTCTTCCGACAGCACTCGCTGTTCGGCAGTGAGGAGGATCAGCATTGGGACTCGAGCTGGAAACGCTTCTTTCCTGACCTGGGCGCCACGCGCATTCGcaaccgcagcagcagcacctcAGAGCGCAAGCCCCTGTCGAGAGATCCGGTGCCCATGACTTGCGACATTTGCGGAAAGACGTACGCTGGCGAGTTCAAGCTGCAGCGGCACCGCACGCGACACTTTGCGCCGGAAAAACCCGCAATATGCGAGGTCTGCGGCAAGGTGTGCATGGACAAGGGCAGCCTGCGGCAGCACCGCTTCATTCACCAGGACCGGCGGTACGAGTGCGACTTCTGCAAGCGGCGCTTTGTGATGAAAGGGGCCGTGCGCGAGCACGTGCGCACGCACCTCGAAGACCGCACTTTCATTTGCAAGGAGTGCGGCGCCGGCTTTAAAGTGGACCGAACGTTGCGCAGCCACATTCAGAACGTGCACAAAAACGTCAACAACGACCCGCAGACGTGCAAGCTGTGCGGATTGGTGTTGAACAACAAGCGCTGCCTGGAGAGGCACCTCCGCACGCACTCTGGCGAGCGGCCGTACGCGTGCGATCTGTGCGAGGCGCGCTACGGCTACCGGAACAGACTCGTTTCGCACAAGATGTCAGTGCACAAGATCATGCCGCACAACTGCAAACACTGCCCCATGGGCTTCAGAGTGCGCCGTGACCTCTTGGGGCACAGCCTTGAGGTGCACGGAATCCACGTGTGA
Protein Sequence: MTSSVTDLCRLCGTDTFNIVRHHIFEAESLAKCIAKKIAECLPVNVTPQDRLPKHMCGECAYKLDLLSEFRDKAVKTEHLLESLVDGVKPEILENEEPDNDLGADDGFRSDSPDQPEPEVLIKEEDAEPRPERRPVRKAARKVGRPRGRKRKQTEIEPDTEEEVESEEAPKKAVKKEEAPPKVYRKRGRKPKNNKESPGWERPFVCHMCGRSYRSSSHLSGHFKVHLPPEFKCEFCGKQFVYKRHLGQHVERHLGVTHQCEVCGTHFSQSNSLSTHMRTLHSQIEKPLACVVCLKRFGRGEDLKRHMRIHTNEKPYACNLCQWKFTQSSQLRTHKMGKHGIMPHICDLCGQGFRNKPLFRQHSLFGSEEDQHWDSSWKRFFPDLGATRIRNRSSSTSERKPLSRDPVPMTCDICGKTYAGEFKLQRHRTRHFAPEKPAICEVCGKVCMDKGSLRQHRFIHQDRRYECDFCKRRFVMKGAVREHVRTHLEDRTFICKECGAGFKVDRTLRSHIQNVHKNVNNDPQTCKLCGLVLNNKRCLERHLRTHSGERPYACDLCEARYGYRNRLVSHKMSVHKIMPHNCKHCPMGFRVRRDLLGHSLEVHGIHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00344552;
90% Identity: iTF_00344552;
80% Identity: iTF_00344552;