Cdip013379.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- L
- Assembly
- GCA_949628265.1
- Location
- OX451262.1:27590823-27597448[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.5 36 5.1 5.8 1 23 3 25 3 25 0.97 2 18 4.5e-07 3.2e-05 24.2 2.2 1 23 31 53 31 53 0.99 3 18 0.0012 0.087 13.4 0.2 1 23 59 81 59 81 0.98 4 18 0.14 9.9 6.9 3.7 1 23 252 275 252 275 0.94 5 18 0.031 2.2 9.0 1.6 1 23 327 349 327 349 0.95 6 18 0.00057 0.041 14.4 0.4 2 19 378 395 377 399 0.91 7 18 0.00012 0.0085 16.6 0.1 1 23 407 430 407 430 0.94 8 18 0.11 7.8 7.2 0.2 2 23 499 521 498 521 0.93 9 18 0.091 6.5 7.5 4.1 1 23 525 548 525 548 0.94 10 18 3e-05 0.0022 18.4 2.0 2 23 572 593 571 594 0.94 11 18 0.0029 0.21 12.2 0.4 1 23 612 635 612 635 0.92 12 18 0.11 8 7.2 2.7 2 23 643 664 642 664 0.97 13 18 0.76 54 4.6 0.5 3 23 680 700 678 700 0.95 14 18 3.8 2.7e+02 2.4 0.0 2 23 716 738 715 738 0.91 15 18 1.3 91 3.9 0.2 1 23 742 765 742 765 0.85 16 18 0.0093 0.67 10.6 0.2 2 23 772 793 771 793 0.95 17 18 0.00067 0.048 14.2 0.0 1 23 801 823 801 823 0.96 18 18 0.018 1.3 9.7 2.3 1 23 830 852 830 852 0.95
Sequence Information
- Coding Sequence
- ATGCCGTTCAGGTGCGAATTCTGCTCTCGCCTCTTCAAGCACAAGAGGAGCAGGGACCGCCACGTCAAGCTGCACACCGGCGACCGCAAGTACAGGTGCAACCAGTGCGAGGCGGCTTTCTCTAGAAGTGACCACCTGAAAATCCACATGAAAACGCACGACACGCAGAAGCCGTTCCAGTGTTCGGCGTGCAACCGCGGCTACAACACGGCGGCCGCGCTGACCTCGCACTCGCAGACGCACAAGCGGCCACCGTCGCTGCCGGcctcgctgccgccgcgcaACAGCCCCCGCCACAGCCCGCCGTCGGCGCCGCCGAGAAGGGTCACGCCGGCCCCCAGTCCAGTTGCACCCGCCTTCCCGCGCAATCTCACGCCAAACCCGCACACCCACGAGTTGCTCAGGGCGGCGCACCctgccgccgcggccgccgccgccgtcctCTTCAACAGAGAACTGCAACAGGTGTTGCAGCACGAGGCCAGCTCGCCGCCGGGCAGCGCCAGGAGCGCCTTCAACGCGGCGGCcatggccgccgccgcgctggcCCACTCGGCCGGCCTGCAGTTCGCGACGCCCACCCTGGCCTGCATCTACTGCACCAAGGACGGCTTCACCAGCATGGAACAGCTGCAGCTCCACGTGCAGGCGATGCATGGTTCAATTCTGAACGGGGAGCGCGAGTATCAGCCGCCGTCGCCGGGGCACCACCAGGGCAGCGCCCGGCAGCCACCCGTGAGCCCGAGCCAGCCGTACAACTGCGACTTCTGCACGATGAAGTTCGACCACGTGCAGagtctgcacaagcacacgaTGGCGGTGCACGCCATGTCGCCGACGACGCCGTTCGGCGCCACGGCCGACAGCGCCGAGCAGCTCAAGCCGACGGACCTGAGCATCAACGGCAAGAGCAACGGCAAGACGCCGCCGCtgtcggcgccgccgccgccgcggaaCGACACGCTGGCGCAGAGCACGTTCCTGTGCAGCCAGTGCAACGCGCCGTGTCCGGACTTTGAGTCGTTCCGCTCGCACCTGCGTTCGCATTTGGACGCCGAACACGGCAAGGGTAGTCCTCCACGGGTGGCGGCCAAGACcgtggcgccgccgccgccgccggcgccgcagCTGCAGTGCCCCGAGTGCCCGGAGAGCTTCACGAACGAGAACTCGCTGGAGGTGCACTGCCTGGGCCACTTCCTGGCCACCAGCACCGAGTTCTCCTGCCAGAGCTGCCTGAAGGCGTTTCCGCGGCCCGACGAGCTGCAGAAGCACCTGATGGACGCGCACGCGCACCAATTACTGCGGTGCGCGCTGTGCCGCGAGCTGTTCGACACGCGGGTGGCCGCGCAGGTGCACTTCGCCGTCAAGCACAGCAGCGAGAGCCGCGTTCTGCGGTGCGTCGCGTGCGGCGACGCCTCCGCCAAGTTCCGCTCCGAGATCGAGTTCGGGCTGCACGTCAAGATCCACCACCTTGCCATGATGGAGAAGCTGAGGTGCCTCTACTGCTCGGAGCTGTTCAAGTCGGACGCCGAGCTGCAGTACCACGTGGCCAGCTACCACCAGAAGATGTACCGGTGCAAGTTCTGCGACGAGGCCTTCCACGTCGAGTTCCAGCTGGACAAGCATCTCGAGCACAAGCACAAGGACAAgtcgccggcggcggcgccgcagGGCAAGCCGCAGATCAAGTCGCCGGGCGCGGTCAGCCTGGTCTGCGCCTACTGCCAGGAGAGCTGCAAGTCGCGCGCCGACCTCGAGGCGCACATGAAGACGCACCACCAGCGGTCCAACGGCGCCGCCGCGCCGTCCAACGGCGTGGCCCTCGGCAGGCACAAGTGCAACATCTGCGACATGGTGTGCGTGAGTCCGGCGCTGCTGGCCGAGCACAAGCTGGCCACGCACTGCAAGGTGCTGCACGGCGACACGTGCAGCGTCTGCAAGGCCAGTCTCGGCACCGAGGAGCACTTCATGAGCCACATGCACAAGCACTGTCCGGGCTCGGCCGGCACCGCGGACATCGGCCTGCCGACCGCGTGCGTCATCTGCCGGCAGACGGTGACCTCGGAGCACGAGGTGCAGCTGCACGCGCGCTTCCACCTGCAGCAGAAGCAGAATCACGCCCTCCAGCCGGGCAAGGGGGTCTCGTGTGGCGAGTGCGCCGGACGCTTCGACTCGGGCGCCGACCTGGAGGCGCACGCGGCCAAGCTGCACTCGCGCAAGTTCGAGTGCATCTCGTGCCAGCTGAGTTTTCACACCGAGTCGGAGGTGCGCGCGCACGTCGAGGCCGCGCACGCACCGGACAACGGCCAGCGGTGCCGGCTGTGCCAGGAGGTGTTCGACACGCCGCTCAAGCTGCAGGTGCACCTGATCGAGCACACGTTCGTCGGCTGTCCGACGTTCGCGTGCTACCTGTGCGGCGCCGTGTTCACGGCCGCCGCCGGCCTGCAGCGCCACATGGGCAGCCACGGCGCCGGCAGCAAGCCCTACGACTGCACCAAGTGCCACCTGCGCTTCTTCTTCCGCGCCGAGCTGGAGAACCACGCGTTCGTGCACGTCGGCGAGAAGCAGCTCAAGGAGGAGCTACACGTcgacgccgacgccgccgacgACAACGCCGCGGCCGACGAGCAGAGCGAGGCCCTCTCGCTGGCCATGCGCAAACGCAAGACGGCCGAGATCAACGGCAACGACATCAGCAGCGCCGCCACGCTCGAACCCGCCGAGCTCGAGCTCAAGAAGCTCAAGCTGGAGGTGCCCGACGAGCAGACGCAGCAGGCCGTCGCCTAA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCNQCEAAFSRSDHLKIHMKTHDTQKPFQCSACNRGYNTAAALTSHSQTHKRPPSLPASLPPRNSPRHSPPSAPPRRVTPAPSPVAPAFPRNLTPNPHTHELLRAAHPAAAAAAAVLFNRELQQVLQHEASSPPGSARSAFNAAAMAAAALAHSAGLQFATPTLACIYCTKDGFTSMEQLQLHVQAMHGSILNGEREYQPPSPGHHQGSARQPPVSPSQPYNCDFCTMKFDHVQSLHKHTMAVHAMSPTTPFGATADSAEQLKPTDLSINGKSNGKTPPLSAPPPPRNDTLAQSTFLCSQCNAPCPDFESFRSHLRSHLDAEHGKGSPPRVAAKTVAPPPPPAPQLQCPECPESFTNENSLEVHCLGHFLATSTEFSCQSCLKAFPRPDELQKHLMDAHAHQLLRCALCRELFDTRVAAQVHFAVKHSSESRVLRCVACGDASAKFRSEIEFGLHVKIHHLAMMEKLRCLYCSELFKSDAELQYHVASYHQKMYRCKFCDEAFHVEFQLDKHLEHKHKDKSPAAAPQGKPQIKSPGAVSLVCAYCQESCKSRADLEAHMKTHHQRSNGAAAPSNGVALGRHKCNICDMVCVSPALLAEHKLATHCKVLHGDTCSVCKASLGTEEHFMSHMHKHCPGSAGTADIGLPTACVICRQTVTSEHEVQLHARFHLQQKQNHALQPGKGVSCGECAGRFDSGADLEAHAAKLHSRKFECISCQLSFHTESEVRAHVEAAHAPDNGQRCRLCQEVFDTPLKLQVHLIEHTFVGCPTFACYLCGAVFTAAAGLQRHMGSHGAGSKPYDCTKCHLRFFFRAELENHAFVHVGEKQLKEELHVDADAADDNAAADEQSEALSLAMRKRKTAEINGNDISSAATLEPAELELKKLKLEVPDEQTQQAVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01046579;
- 90% Identity
- -
- 80% Identity
- -