Cdip016122.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451263.1:19201721-19205293[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.3e-12 1.3e-08 34.4 0.0 12 64 26 76 17 88 0.86 2 3 1.4 2.8e+03 -1.9 0.0 42 67 251 274 226 282 0.60 3 3 5.4 1.1e+04 -3.9 0.0 56 69 426 439 419 441 0.76
Sequence Information
- Coding Sequence
- ATGAGCAAGAGACTGAGTAAACCATACAATGCATCTGTGATGTGCAAAGTCAAACACATCACACAACCTTTGGGAAAAGATGGTTGGCGTCGAAGAGTTTACCTGAGAACCACTGGCGCGAGTGCAGGTCGCAAGGACATCGTTCTCATCGCCCCTGACGAAACCCTTTTGCGTTCAAGAGTTGAGATTGATCGCTACTGCAAGGAGCACAATTTGACACTGGATCCGGAGGTGTATAGCGTTTCTCAATCAAAAGCTGAACACCttttcaaaaaagaaattgcgGCTCTGATTAGAATTAAAGAAGCAACCAAAAACACTCAAGAGAGTGTTGCTAGGAAAGCTAAAGAAAATGATAAGGCCAACAAAGAGTCGCTTAAAGACAaggtagcagcagcagcatcagcagctcAAATGTCAGTCGCACCAGTTAAGGCCAAGAGGGGCAGGCCGCCAAAAGTTAAGTCTGTCCTCTCTGAGAGATGCAGGAACAAGTCTGGAGACTCTGCTAGCAGCTCTCTCACAAAGAAACGAAAACATTCAGTTTCTCCAGTCAAGGATGCGAAGAAATTGAAGGAATCACCCACTGCATTAACTGGTCGGCAAACAAGGAACTCGCTGGCAACCTCTTTTTCCCCACCAAAGCTGGATAATCCAACTGGGCTGGTCACCCCTGATAGCCTGCCAAAATCTTGGAAGGTGCAGAAAAATGGGGACAGTAACTTGATATTTGTCgagagcggcagcagcagtctGAGCTCCCTTCGACAGCTGAAGATATACGCTGCCAAACACTGCATTCGTGTGGACTTAGAGGAGTTTAAGCACTTCTTTGAAACTCAATCAGACGCGACTGGTAATCATGCAAGCCAAAATGAGACTGCTGAAGCGGACATACCAGAAGGTGCAGACGAAAGTAAGAGTGTTGCTACCTCTGAATCGTTGGAACACATTGAAGATATCAGTGAAGATGAGGAGGACAAAGAAACTGGGGAGCAAGCTGAAGGTTCTGAAGCAAAAAAAGAGGGCGAAGAGGACACTGCATTGGCaaatgcAGAAGAATCTGAGTCCCTGGGGAGTGAATTAGAGGAACTTGCATCAAACATCTTTGAGTCTGACGACTACGACGTGCCAATGGATGACTTTGAAACCAGACTGCAAACTGAAGAGTTtgcaggaaaagaaaaagaaccGGAAGCAGAAGCTAATTCTAAAGAAGTGAAAGAGGAAGAAATTGATCCAGAAATACCAGTTGAAGACATCAAAGTGGTGAACAACAAAGACCTGGACAAGATAGACCCAACCAACTTCAAGTTCTTTGTACTGCCAGAAGATGATGGTGAACTGCCCAGTGACTCAATAACTGCCGCTGATAACCAATGTGAAGAAGAAAGTTCCAACGAGGAGGAGAGCCATGTTCCTGAATCAGCAACAGAATTGGCAGGCGTACAAGGTGAACCAGAAGAAGAGTGGGATCTGTGCTCCCCGTACAACCTGATTTACGAGAGCCTGGGCACAGACCAATGGCGCCTACTTGTTGCCTCGATAATCCAGCCTCACGTGTCGGCACAAGTCGGACAAGTTCTGACTCTCAACTTCCTTGAACGCTGTCCCGACCCAGCATCAGCCCTCCAGCTGTCTGACCCTTTTTCTCTTCCTGAGTGCGAGGTCGACCCAAAGTTTGCGTGGGTGCTGGGCAAATTGCTGAAGCTGGCCAGGTTTCTGACTGAAGGAACAACCGACGAGAAGCTGAAGGAGCTGATTGGATCGTACGGCGTTGCTGTCCTCACTATATTTGGTGAATCAAAGCTGGACATTGTAACAGAAGAGTATGATCTCAAGACATACCTGAGTTGGCGCCGAAACCAGCAAAGTATGGGTCAAGAtgaatag
- Protein Sequence
- MSKRLSKPYNASVMCKVKHITQPLGKDGWRRRVYLRTTGASAGRKDIVLIAPDETLLRSRVEIDRYCKEHNLTLDPEVYSVSQSKAEHLFKKEIAALIRIKEATKNTQESVARKAKENDKANKESLKDKVAAAASAAQMSVAPVKAKRGRPPKVKSVLSERCRNKSGDSASSSLTKKRKHSVSPVKDAKKLKESPTALTGRQTRNSLATSFSPPKLDNPTGLVTPDSLPKSWKVQKNGDSNLIFVESGSSSLSSLRQLKIYAAKHCIRVDLEEFKHFFETQSDATGNHASQNETAEADIPEGADESKSVATSESLEHIEDISEDEEDKETGEQAEGSEAKKEGEEDTALANAEESESLGSELEELASNIFESDDYDVPMDDFETRLQTEEFAGKEKEPEAEANSKEVKEEEIDPEIPVEDIKVVNNKDLDKIDPTNFKFFVLPEDDGELPSDSITAADNQCEEESSNEEESHVPESATELAGVQGEPEEEWDLCSPYNLIYESLGTDQWRLLVASIIQPHVSAQVGQVLTLNFLERCPDPASALQLSDPFSLPECEVDPKFAWVLGKLLKLARFLTEGTTDEKLKELIGSYGVAVLTIFGESKLDIVTEEYDLKTYLSWRRNQQSMGQDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -